Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01817 ATGAATCTTTGGAGCGACGAGAACTCATCAGTGATGGAGGCTTTTATGACCTCATCCGATTTATCAACCTTATGGCCATCACAACCACAGCCGCCGTCGTCACAACCACCACAAACCACCACCGGATTCAACCAAGACACACTCCAACAACGTCTTCAAGCTTTAATCGAAGGCGCTTCCGAAATCTGGACTTACGCTATCTTCTGGCAACCTTCTTACGACTATTCCGGCTCTTCTCTTCTCGGTTGGGGTGACGGTTATTACAAAGGCGAAGAAGACAAATCAAAATCAAAATCAAAATCCAAAGCTACTTCACCAGCTGAACAAGAACACCGTAGAAAAGTTCTCCGAGAACTTAATTCTTTAATCTCCGGTAATCCAGTACCGGAAGAATCTTCCGTCGATGAAGAAGTTACAGATACGGAGTGGTTTTTTTTAGTTTCTATGACTCAATCTTTTGTTAACGGAAGTGGACTTCCTGGACAAGCTTATTTTAATTCAACTCCGGTGTGGTTAGTCGGAGGTGAGAATCTCGCCCTCTCGGTTTGCGAGAGGGCGAGACAAGGTCATGAACATGGTTTACAGACGCTGACGTGTATACCGTCCGCGAACGGTGTTTTAGAGCTTGGATCTACTGAATTGATTTATCAGAACAACGATCTGATGAATAAAGTTAAGATGTTGTTTAATTTTAATAATAATTTTGATTTTGGATCTTCTTGGCAATTAGGTAGTAATTCTACTGTAATTACTCATCAAGGTGAAAATGATCCTTCTTCAATTTGGCTTAATGATCCTGAAACTAGAGATTCTGTTGATAATAATTCTCTTGCTGCAGCAACAACAACAACAACAACAACGAACACTTCAATTTCAATTCCAAGTCATCATCAGCAACAGCAACAGCACCAGAACAATAGTAATAATCAGAGTTTGAGTGTGACGAAAACGATTCAATTTGAAACTCGCGGTTCAAGTACTTTAACAGAAGCTCCTAGTGTTGTTCATGTTTCAAGTAAGCAGAATCAACAAGGATTGTTTTCTAAGGAAATGAATGTTTCGGAGTACGGTGGGGGTAATAGTCAGCAACGTTCGTTGAAGCCGGAATCTTGTGAGATTTTGAGTTTTGGTGGTGAGAGTAAAAAGAGTTCTTATGTTGCTAATAATGGAAATTCGAATTCGAATTTTTTCTCTGGTCAATCACAGTTAGTTTCAGTTGCTGAGGAGAACGGGAATGGAAATGGAAATGGAAATGGGAAGAGGAGGTCTCCGAATTCGAGAGGAAGCAATAATGATGATGGAATGCTATCTTTTACTTCTGGTGTAATTGTTCCACCGGTGAATTTGAAATTCTCTGGTGGTACTGGTGGTGGTGATTCGGACCATTCGGATCTGGAAGCTTCGGTGGTGAAGGAAGTGGATAGTAGTCGTGTGGTGGAGCCGGAGAAGAAGCCGAGGAAGAGAGGGAGGAAGCCGGCGAATGGAAGAGAGGAACCGTTGAATCATGTTGAAGCCGAGAGACAACGAAGAGAGAAGCTAAATCAGAGATTCTATGCTCTTCGTGCAGTTGTTCCTAATGTTTCAAAGATGGATAAAGCTTCACTTTTGGGTGATGCTATATCATACATTACTGAGCTGAAAACAAAGCTTGTGAAAACTGAATCGGATAAAGATGAATTGGAAAAACAACTTGATGCAGTGAAGAATGAACTTCAGAAAGTCAATGAAAACTCGTCTCATCCACCGCCTCAACCTCAACAACAACAACAACAACAACAACAGCAAGTACCCGATAAACCCTCTTCCAATCAAGCTTTAATCGATTTAGATATTGACGTGAAGATTATAGGTTGGGATGCAATGATAAGGGTCCAATGCAGTAAGAAAAACCACCCTGCAGCAAAGTTGATGGCGGCGTTGATGGAACTTGACCTAGAAGTGCACCACGCGAGTGTTTCCGTGGTGAATGATTTGATGATACAACAAGCAACCGTGAAGATGGGGAGTCGTTTTTACACCCAGGAGCAGCTTCGGGCAGCATTGTCCTCTAAAGTCGGGGATGTTCAATAA 2070 0.4193 MNLWSDENSSVMEAFMTSSDLSTLWPSQPQPPSSQPPQTTTGFNQDTLQQRLQALIEGASEIWTYAIFWQPSYDYSGSSLLGWGDGYYKGEEDKSKSKSKSKATSPAEQEHRRKVLRELNSLISGNPVPEESSVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAYFNSTPVWLVGGENLALSVCERARQGHEHGLQTLTCIPSANGVLELGSTELIYQNNDLMNKVKMLFNFNNNFDFGSSWQLGSNSTVITHQGENDPSSIWLNDPETRDSVDNNSLAAATTTTTTTNTSISIPSHHQQQQQHQNNSNNQSLSVTKTIQFETRGSSTLTEAPSVVHVSSKQNQQGLFSKEMNVSEYGGGNSQQRSLKPESCEILSFGGESKKSSYVANNGNSNSNFFSGQSQLVSVAEENGNGNGNGNGKRRSPNSRGSNNDDGMLSFTSGVIVPPVNLKFSGGTGGGDSDHSDLEASVVKEVDSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLVKTESDKDELEKQLDAVKNELQKVNENSSHPPPQPQQQQQQQQQQVPDKPSSNQALIDLDIDVKIIGWDAMIRVQCSKKNHPAAKLMAALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRAALSSKVGDVQ 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01817 689 FunFam Transcription factor bHLH13 490 564 - -
Trre10g01817 689 Pfam Helix-loop-helix DNA-binding domain 501 546 IPR011598 GO:0046983
Trre10g01817 689 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 497 546 IPR011598 GO:0046983
Trre10g01817 689 MobiDBLite consensus disorder prediction 91 111 - -
Trre10g01817 689 Coils Coil 543 577 - -
Trre10g01817 689 MobiDBLite consensus disorder prediction 407 507 - -
Trre10g01817 689 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 48 229 IPR025610 -
Trre10g01817 689 MobiDBLite consensus disorder prediction 282 311 - -
Trre10g01817 689 Gene3D - 489 579 IPR036638 GO:0046983
Trre10g01817 689 PANTHER MYC 13 684 IPR045084 GO:0003700|GO:0006355
Trre10g01817 689 CDD bHLH_AtAIB_like 494 570 - -
Trre10g01817 689 MobiDBLite consensus disorder prediction 407 437 - -
Trre10g01817 689 MobiDBLite consensus disorder prediction 464 507 - -
Trre10g01817 689 SMART finulus 503 552 IPR011598 GO:0046983
Trre10g01817 689 MobiDBLite consensus disorder prediction 574 601 - -
Trre10g01817 689 MobiDBLite consensus disorder prediction 21 43 - -
Trre10g01817 689 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 500 566 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01817 Trre-Chr10 16923620 16925689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01817 1 686 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.247 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g01817 bHLH-MYC_N 8.3e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01817 K13422 - gmx:100790168 803.127