Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01807 ATGAGTAGTGTCATCCATGTGAAGACCCCTTCCGGTAAATTTATCACAATGGAGGTGCAAGATACCGATACAATACGAAGTATCAAGGAGAAAATTTCAGAGATACATGGAATTCCACATGATAGACAAAAGATAGAATTTTTTGATAAAAGAGCATATTTCAAATCAGGTGATGTATCGGATATTCATAAATTAGAGGATGCCAAATTGGCTGGTACATGTGATTCTGCCAAAGCACTTATTAGAAAGAGTGAAACAAAGAAGAAATTGGGGGAGGAAACAACGAGGATTAAGAGGAGGTTCAACGAGTGA 312 0.3718 MSSVIHVKTPSGKFITMEVQDTDTIRSIKEKISEIHGIPHDRQKIEFFDKRAYFKSGDVSDIHKLEDAKLAGTCDSAKALIRKSETKKKLGEETTRIKRRFNE 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01807 103 ProSiteProfiles Ubiquitin domain profile. 5 47 IPR000626 GO:0005515
Trre10g01807 103 PRINTS Ubiquitin signature 34 54 IPR019956 -
Trre10g01807 103 PRINTS Ubiquitin signature 13 33 IPR019956 -
Trre10g01807 103 Gene3D - 4 75 - -
Trre10g01807 103 CDD Ubl_ubiquitin_like 5 51 - -
Trre10g01807 103 Pfam Ubiquitin family 5 47 IPR000626 GO:0005515
Trre10g01807 103 SUPERFAMILY Ubiquitin-like 5 48 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01807 Trre-Chr10 16617699 16618671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01807 5 51 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 48.936 2.24e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01807 - K02927 tva:TVAG_2v0993500 49.2914