Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01806 ATGGCAACTTTAGAATCAGCCATAACTGTATTTACACCTCAACGTTTTTCAAATAACTACTACCATTTCCTCGCTAAATCACCCGATTCCGTTAAACTCCATGCTTCCACCTCAATCCCTTCTTCTTCTTCTTCTTCATCTTCCCTTTTCTCTCACTTTTCTTCATCTTCTTCCAAATCCCGAACACTCTGCTTTGCTTTACAAGAGGTAACAGAAGCAGCAATTCAAGACAATAAAACAGAGCCATTAAACAACGTTAAGAAGAAGCTCTGTGTCTTTAACTTACCTTGGACTCAGTCTGCACCTGACATCAAGGACCTCTTCGCCCAATGCGGAACTGTAATCTCCGTCGAGATTATAAAGAACAAAGATGGGAAGGGAAAAGGTTATGCATTTGTTACTATGGATACAGGAGAAGAGGCTCAGGCTGTTGTTGATAAATTTAATGGTCATGAAATATCAGGCAGGATAGTGAGGGTAGAGTTTTCAAAGAGTTTAAAGAAACCTCCTTCTCCACCTCCTCCAGGTTTACCTCCTAGCGATGCACGCCATGTAATTTATGCTTCCAACATTGCATGGAAAGCAAGATCTACACATCTCAGAGACATCTTCACTGAGAATTTCAAAGAACCAGTTTCAGCCAGGGTTGTTTTTCAGACCGCTGATGGGAGATCTGCTGGGTATGGATTTGTTTCTTATCATACAAAGGAGGAAGCAGAGGCTGCCGTTTCTGCTTTAGATGGGAAGGAGTTAATGGGACGACCACTTCGCATAAAAATAAGTGAAAAGAAGGTTAAAAAAGCTGAAAGTGAAGAAGGCGAAGAGCAAATTGCTGAAAGTGATGAAGGCGGTGAAAAGCAAGTTGACAACGCTCAACCGGAAGGGTTATAA 891 0.4164 MATLESAITVFTPQRFSNNYYHFLAKSPDSVKLHASTSIPSSSSSSSSLFSHFSSSSSKSRTLCFALQEVTEAAIQDNKTEPLNNVKKKLCVFNLPWTQSAPDIKDLFAQCGTVISVEIIKNKDGKGKGYAFVTMDTGEEAQAVVDKFNGHEISGRIVRVEFSKSLKKPPSPPPPGLPPSDARHVIYASNIAWKARSTHLRDIFTENFKEPVSARVVFQTADGRSAGYGFVSYHTKEEAEAAVSALDGKELMGRPLRIKISEKKVKKAESEEGEEQIAESDEGGEKQVDNAQPEGL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01806 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 257 IPR000504 GO:0003723
Trre10g01806 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 157 IPR000504 GO:0003723
Trre10g01806 296 SUPERFAMILY RNA-binding domain, RBD 88 263 IPR035979 GO:0003676
Trre10g01806 296 MobiDBLite consensus disorder prediction 263 296 - -
Trre10g01806 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Trre10g01806 296 SMART rrm1_1 89 161 IPR000504 GO:0003723
Trre10g01806 296 SMART rrm1_1 185 259 IPR000504 GO:0003723
Trre10g01806 296 CDD RRM_SF 90 161 - -
Trre10g01806 296 Gene3D - 168 277 IPR012677 -
Trre10g01806 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Trre10g01806 296 Gene3D - 59 167 IPR012677 -
Trre10g01806 296 PANTHER OS02G0815200 PROTEIN 37 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01806 Trre-Chr10 16610799 16614991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01806 104 267 Eukaryotic Initiation Factors Gene Family AT4G34110 25.444 1.13e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01806 - - vum:124843240 281.567