Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01805 ATGGCTTCTCTTGAAAATCCAAAAGCTTGGGTTCCATATATGAACAACAAAGATTGTTCTCAAGGTTTTTGTAGCTTCTATTGCCCTCAATGGTGTTATGTAGTCTACCCTCCACCTCCTCCTTCACCCTTTGAATTCCCTGATGATGATTCAAGTACAAACTTCTCACCTCTTGTTATAGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTAACTTACTACACCTTAATATCGAAGTACTGCGGCCGTAGAATATCATCATCGCAAAGTGAATTGCGCGAAACAAACGATGAATTAGAAGACAATCATCATCATAACCCTTCAATCCATGAGCCATGGCATGTTTCAACAAATGGCTTAGAGGAAGCTTTGATTAAATCCATAACAGTTTGCAAGTACAAAAAGAATGATGGATTGGTTGATGTAACAGATTGTTCTGTTTGTCTCAATGAGTTTCAAGATGATGAAAATATTAGACTTTTACCTAAATGTAGCCATGCTTTTCATCTTCCTTGTATTGATACATGGCTCAAATCTCACTCAAGTTGTCCTCTTTGTCGAGCTAGCATATTCGCCTTCAATGCTTCGAGTTCAAGTGGTTCAACACTTCATGTGCCAGCACAAGTTATGGAACAATCTTCAAGGAATGAAGTTTCTTTAGAAAATCAACATTTGAATGAAATTGTAGATGTTGAAAGAGACAATGAATTGGGTGTGGAGGAACAAGTTCCAATTCCAAAGACTGAATTTCGCGCTCTAAGTGATTTAGGAAATTTAAGAGGAAGGCATAATGTGATTGAGATTAGAGATAATGAAGATTATCGTGAATCGATTCGAAGATCGGTTTCTATGGATCATTCATTTCAAAGTGGTCTTTCACTTGTTGAAGATGTTAATGTTGTGCATATAAATCAAGAACAAGATTCTCAAGTTGAAAGTTCATCAAAGAGATTAAGAGGTGAAAGTGAAAGTTGTAAATCTAGCTATAGTAGAAAGGTTTTGCATTGTGTTTTAAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTTCTTAGTAGAAGTGGCAGAGGAAGGCTTGGAGTTTTGCCCGTCTAA 1110 0.3649 MASLENPKAWVPYMNNKDCSQGFCSFYCPQWCYVVYPPPPPSPFEFPDDDSSTNFSPLVIAIIGILASAFLLVTYYTLISKYCGRRISSSQSELRETNDELEDNHHHNPSIHEPWHVSTNGLEEALIKSITVCKYKKNDGLVDVTDCSVCLNEFQDDENIRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFAFNASSSSGSTLHVPAQVMEQSSRNEVSLENQHLNEIVDVERDNELGVEEQVPIPKTEFRALSDLGNLRGRHNVIEIRDNEDYRESIRRSVSMDHSFQSGLSLVEDVNVVHINQEQDSQVESSSKRLRGESESCKSSYSRKVLHCVLSPIAMKRSFSSGRFFLSRSGRGRLGVLPV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01805 369 FunFam RING-H2 finger protein ATL54 122 195 - -
Trre10g01805 369 MobiDBLite consensus disorder prediction 94 112 - -
Trre10g01805 369 PANTHER RING-H2 FINGER PROTEIN ATL16 43 324 IPR044600 GO:0016567|GO:0016740
Trre10g01805 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Trre10g01805 369 SMART ring_2 147 188 IPR001841 -
Trre10g01805 369 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Trre10g01805 369 MobiDBLite consensus disorder prediction 94 114 - -
Trre10g01805 369 Pfam Ring finger domain 146 189 IPR001841 -
Trre10g01805 369 SUPERFAMILY RING/U-box 127 195 - -
Trre10g01805 369 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01805 Trre-Chr10 16605351 16606460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01805 6 369 C3H Transcription Factor Family AT5G17600 41.333 1.20e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01805 - - gmx:100792267 442.58