Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01804 ATGGCACCTTCTTTTGACATAACAAGTCACACTGTTTGTGTCATGGATGCTTCTGGCCAATTGGGTTTTAGTCTTGTCCAAAGACTCCTTCAAAGAGGTTATATTGTTCATGCCTCCGTTCAAAAATATGGGGAAGATCTATTCAATGGGATTTCAGCTGATTCAGATAAACTCAAGATTTTTCAATCAGACCCTTTTGATTATCATAGCATAATTGATGCTCTTAGAGGTTGTTCTGGTTTGTTCTATACATTTGAACCTCCTCTTGATCAACCCAATTATGATGAATATATGGCTGACGTGGAAGTTAGAGCAGCACACAATGTGCTTGAAGCTTGTGCTCAGACAGAAACTATTGATAAAGTTGTTTTCACATCTTCAGCTACTGCTGTTGTTTGGAGGGAAGATCGTAAAACCATTGAACCTGAAATAGATGAAATTCATTGGAGTGATGTCAATTTCTGTCGAAAATTCAAGCTATGGCATGGGATGTCAAAGACATTATCAGAGAAAACAGCGTGGGCCTTAGCAATGGACAGAGGTGTGAACATGGTGTCAATAAACGCAGGGTTATTGATGACAAATGATCTTTCCATCAAACACCCTTACTTGAGAGGTGCTGCTGAAATGTACGAGGATGGTGTCTTTGTGACCGTTGATTTAAGATTTTTGGTGGACACCCACATCTGTGTCTACGAGGATGTTTCATCGTACGGTCGTTATTTGTGCTTCAATCATATTATTAATACTCAAGACGACGCCGTTCAGCTTGCACAGAAGTTAGCTCCTACCGCACCTTCTTCTTTACCCCAAAGTGATGACTATGGTAAGATATTCATTGAACAGAAAATAAGCAACAAGAAGTTGAACAAATTAATGGTGGACTTTGAGGCTTAA 897 0.3946 MAPSFDITSHTVCVMDASGQLGFSLVQRLLQRGYIVHASVQKYGEDLFNGISADSDKLKIFQSDPFDYHSIIDALRGCSGLFYTFEPPLDQPNYDEYMADVEVRAAHNVLEACAQTETIDKVVFTSSATAVVWREDRKTIEPEIDEIHWSDVNFCRKFKLWHGMSKTLSEKTAWALAMDRGVNMVSINAGLLMTNDLSIKHPYLRGAAEMYEDGVFVTVDLRFLVDTHICVYEDVSSYGRYLCFNHIINTQDDAVQLAQKLAPTAPSSLPQSDDYGKIFIEQKISNKKLNKLMVDFEA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01804 298 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 289 - -
Trre10g01804 298 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 134 IPR002225 GO:0003854|GO:0006694|GO:0016616
Trre10g01804 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 265 IPR036291 -
Trre10g01804 298 Gene3D - 4 298 - -
Trre10g01804 298 FunFam Cinnamoyl-CoA reductase-like SNL6 isoform A 4 298 - -
Trre10g01804 298 CDD FR_SDR_e 12 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01804 Trre-Chr10 16579726 16582823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01804 12 296 Monolignol Biosynthesis Gene Families AT5G58490 31.023 1.39e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01804 - - gmx:100793329 542.732