Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01800 ATGGCCAAAAAGAAACAGAAAGACCCAAATCAAACCCCTCAAAACGACACCGTTTCAGCTCCTTCCAGCATTTTCGATACGCTTTTCGCCAACGCGCCGGAACAAAACACCGCCACCGCCGCTTCTCTATTTTCCGATGAAAACCCCTTTAAGAGAAAGGCTTCACAACCAGCTCCCATTTCCGACGTATCCGAAAAAGGCATCGTAGATGAAAAGAAGAGGAAGAAGAAGAAAGATGAAAGTTCCGTGATTGATTCAAATTCTGCAATTGAAGTTTCGGAGAAGAAGAAAAAGAAGAAAAGTGGTTCAGACGAAGGGGAAGAGAAGGAAAAAGAGCTTAATTTGGATGTAGAAACGATTGGGAAGAAGAAGAAGAGGAAAAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATTGTTGAGGGAGGAGATAAAGATGAAAAAGTTGGGAATAAGAGAAAATTGCGCGATAATCCGGCAGATATGTTGGTTTCAAAAGAAGGTTTTGATGATGAAGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCGCTTAAGGTGAAAAAGAAGACTTTGTTGAAGGAGTTTAAGCAATTTGGTGAGGTTGAATCTGTTAGGATTCGTTCTGTTCCTTTACAAGATACCAAAAAGCCTAGAAAGGGAGCTATCCTTGCGAAGAAGATCAATGAATCGGCCGAAAGTGTCAATGCTTACGTTGTTTTCAAAACAGAGGAGTCTGCTCAGGCTTCTTTGGCCCACAACATGACTGTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACTCAAAGGGGATAGTTCTTCGCTTTATGATAACAAGAGAACTGTTTTTGTGGGCAATCTCCCGTTTGATGTGAAGGATGAAGAGCTTTATCAGCTATTTAGTGGTATACCCAATCTAGAATCAAGTGTAGAAGCTGTTAGAGTTGTCCGAGATCCTCATCTTAATGTTGGAAAGGGAATTGGATATGTGCTATTTAAAACAAGGGAAGCTACCATTTCTGTTGTTAAGAAACGGTCCTTGACACTGCGAGATCGAGAATTGAGACTCACTCATGCCAAAGCAGATGCTACTGCTACCCCATCTAAAAGGCCGTACTCTCCAGCGGCACGTCCTAGTCATGGAAAACCAGGTGCTACCCCGTCTAAAAGGCCATACTCTCCAGCAGCACAAGCTCGTAGTACTCCTGCAAAGAAGTTTTCAGGGGATTCAAGGTCTCCTTCAAGCATTAAGAACAGGTCAAACAACAAAGCTACTGCTTCTTATCAGGGTCTGCGAGCATCCAAAACTGATGTCCACAAGAAAAGTCATGGTGTAGAAAAACCAAAAGAGCGCACAAAGAAAAGACCAACAGTTGCTGCCAGAAAGGCTAAAGCAAACATGCAGAAGGAGGGTGGTACACCAAAGGGTGCTACACCAAAACAAGCAGGGTTTAAACGCAAGTTTGACAGTCGTACTCCTGATAGCTCCCGACGAGTTAACAAAGCCCAAAAGAAGAGGTAG 1554 0.4337 MAKKKQKDPNQTPQNDTVSAPSSIFDTLFANAPEQNTATAASLFSDENPFKRKASQPAPISDVSEKGIVDEKKRKKKKDESSVIDSNSAIEVSEKKKKKKSGSDEGEEKEKELNLDVETIGKKKKRKRDEVEKEWEEKKYGIVEGGDKDEKVGNKRKLRDNPADMLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKQFGEVESVRIRSVPLQDTKKPRKGAILAKKINESAESVNAYVVFKTEESAQASLAHNMTVVEGNHIRVDRACPPRKKLKGDSSSLYDNKRTVFVGNLPFDVKDEELYQLFSGIPNLESSVEAVRVVRDPHLNVGKGIGYVLFKTREATISVVKKRSLTLRDRELRLTHAKADATATPSKRPYSPAARPSHGKPGATPSKRPYSPAAQARSTPAKKFSGDSRSPSSIKNRSNNKATASYQGLRASKTDVHKKSHGVEKPKERTKKRPTVAARKAKANMQKEGGTPKGATPKQAGFKRKFDSRTPDSSRRVNKAQKKR 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01800 517 Gene3D - 176 279 IPR012677 -
Trre10g01800 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 372 IPR000504 GO:0003723
Trre10g01800 517 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 271 436 - -
Trre10g01800 517 MobiDBLite consensus disorder prediction 369 517 - -
Trre10g01800 517 MobiDBLite consensus disorder prediction 493 510 - -
Trre10g01800 517 CDD RRM1_RBM34 180 270 - -
Trre10g01800 517 SMART rrm1_1 292 368 IPR000504 GO:0003723
Trre10g01800 517 SMART rrm1_1 181 270 IPR000504 GO:0003723
Trre10g01800 517 CDD RRM2_RBM34 292 368 IPR034221 -
Trre10g01800 517 MobiDBLite consensus disorder prediction 1 135 - -
Trre10g01800 517 MobiDBLite consensus disorder prediction 65 135 - -
Trre10g01800 517 Gene3D - 280 380 IPR012677 -
Trre10g01800 517 SUPERFAMILY RNA-binding domain, RBD 173 280 IPR035979 GO:0003676
Trre10g01800 517 MobiDBLite consensus disorder prediction 414 443 - -
Trre10g01800 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 224 IPR000504 GO:0003723
Trre10g01800 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 365 IPR000504 GO:0003723
Trre10g01800 517 MobiDBLite consensus disorder prediction 445 464 - -
Trre10g01800 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 274 IPR000504 GO:0003723
Trre10g01800 517 MobiDBLite consensus disorder prediction 11 44 - -
Trre10g01800 517 SUPERFAMILY RNA-binding domain, RBD 286 394 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01800 Trre-Chr10 16535797 16539639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01800 151 371 Eukaryotic Initiation Factors Gene Family AT1G34140 25.110 7.60e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01800 K14837 - gmx:100784494 611.683