Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01782 ATGAATGGTAGACACCACCGCCACCACCACCACCACCAACAACAACATCACCGCGCCAAATCCAAACTCCGCTACGTCAACAAATCTGAACTTGTTTCTTCACCTAACTCTGTCTCAGATGTTGAAAAACGAGTTTCCCCTGAAGATGTTAATGTCAACGTTAACAACAACAACAACAACGTTGATGATGTGGCTAGTTCAAGCAAGACCAAGGAAGAAGATAATGATGATGGTATTGATATTATGGATGATAGGCTTGATAAGTTGTTAAGTGATATTCAACAACATGAATTGTCTCAGGAACAGATCATAATCAATGATCAATTGCAGCAAGATGAGTTGCTTGTGGTGGAGTCGATTTATGGAGAAAATGTTTTCAACCTTGATTCATGGAAAGGCCTGCGCTGTTTTCAGATACACATAAACATCGATATTTTGGGTGAAATAGGCATTACTGCTAAGGTGAACTCTGTCAATGAAGTTGAAACTATAAACGGAAATTCAGATGATTTCTTATACTCTTTCAAAGTTCAATACCTTCCACCGATTGTTTTGACATGTTTATTACCTAAGTCATATCCGAGCCACCAACCACCTATATTTACAATCTCTGTTAAGTGGTTGGAATCTGCGAAGATTTTGAGTTTATGTTCCATGTTGGATTCAATATGGACAGAACAACAAGGGCAAGAAGTAATTTACCAATGGGTAGAGTGGTTACATAGTTCTTCACTTTCTCATCTGGGATTTGATGAGGAGATTAGACTAGGTCCTTACGGTACGAATCGTGTTGCGGACGCGCGTGTGGTTTCAGGAATTGGGTGCATTGATGCTGATATTCCTTTTTTACAAAGCTACAACAATGAGAGACGCCATCAGAATTTCCTTAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACCGAGTTCGTCCAGTTACCATGCAAACATTTCTTTTGCCGCAAATGCTTGCAGACCTTCACTCAGATACACGTAAAAGAAGGAAATGTTGGTAATCTTCAATGTCTTGATGCAAAATGCAAGGACATGATTCCACCTGGCCTTTTAAAACACTTTCTTGCTGACGAAGATTACGAACGTTGGGAATCAATGATGTTAGAGAAAACACTTGCATCAATGTCTGATGTTGTATATTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAACATGCTCAATGCACTAAATGCTTTTTTAGCTTTTGCACCCTTTGCAGAGAACGACGCCATGTTGGCATAGCATGCATGACGCTAGAAATGAAGCTTCAGCTTCTGCAGGATCGTCAAAATTCATCTCAATTAAAGGGAAATCAAAGGCAACTTGAACTTGAAAAGATCAATGAAATGCTCAGCGTGAGAGAAATTCGCCGCGATTCCAAGTTGTGCCCGTATTGTGACATGGCGATTTCTCAAACTGAAGGTTGTAATAAAATGAAGTGTGGTAATTGTGGAGAGTACTTTTGTTACCGTTGTAACAAACCACTTGATGCATCAGATCCATATGGACATTTCAGGGACGAGGGGTCGTGTGAATTGTTCCCACGAGAAATGGTTGAGAACTGGCAAGCAGCACACATAAATCCTCGCCAGGAAATACAACAAATACATGCTGAACTCTTTCACCTCGGTGGCTCAGCATGTCCTAGTTGTCGTCAATTTAATGTAAAGATGGGAAACAATAACCACATGTTATGTTGGGCATGCCAAAGCCATTACTGCTACTTATGCAACGAGATTGTGAGGCGCGGCAGTAAGCATTATGGACCAAAAGGTTGCAAACAGCACAGTGAGGGATAG 1836 0.4063 MNGRHHRHHHHHQQQHHRAKSKLRYVNKSELVSSPNSVSDVEKRVSPEDVNVNVNNNNNNVDDVASSSKTKEEDNDDGIDIMDDRLDKLLSDIQQHELSQEQIIINDQLQQDELLVVESIYGENVFNLDSWKGLRCFQIHINIDILGEIGITAKVNSVNEVETINGNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLESAKILSLCSMLDSIWTEQQGQEVIYQWVEWLHSSSLSHLGFDEEIRLGPYGTNRVADARVVSGIGCIDADIPFLQSYNNERRHQNFLKELHECCICYSEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGNVGNLQCLDAKCKDMIPPGLLKHFLADEDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCTKCFFSFCTLCRERRHVGIACMTLEMKLQLLQDRQNSSQLKGNQRQLELEKINEMLSVREIRRDSKLCPYCDMAISQTEGCNKMKCGNCGEYFCYRCNKPLDASDPYGHFRDEGSCELFPREMVENWQAAHINPRQEIQQIHAELFHLGGSACPSCRQFNVKMGNNNHMLCWACQSHYCYLCNEIVRRGSKHYGPKGCKQHSEG 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01782 611 SUPERFAMILY UBC-like 107 242 IPR016135 -
Trre10g01782 611 MobiDBLite consensus disorder prediction 1 78 - -
Trre10g01782 611 CDD BRcat_RBR_RNF14 381 432 - -
Trre10g01782 611 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 122 521 IPR031127 GO:0004842|GO:0016567
Trre10g01782 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 385 IPR013083 -
Trre10g01782 611 MobiDBLite consensus disorder prediction 27 41 - -
Trre10g01782 611 Gene3D - 449 555 - -
Trre10g01782 611 ProSitePatterns Zinc finger RING-type signature. 319 328 IPR017907 -
Trre10g01782 611 SUPERFAMILY RING/U-box 297 381 - -
Trre10g01782 611 MobiDBLite consensus disorder prediction 1 23 - -
Trre10g01782 611 SUPERFAMILY RING/U-box 370 433 - -
Trre10g01782 611 SUPERFAMILY RING/U-box 462 517 - -
Trre10g01782 611 MobiDBLite consensus disorder prediction 49 65 - -
Trre10g01782 611 CDD Rcat_RBR_RNF14 460 526 IPR047548 GO:0008270
Trre10g01782 611 Pfam IBR domain, a half RING-finger domain 465 508 IPR002867 GO:0008270
Trre10g01782 611 Pfam IBR domain, a half RING-finger domain 370 428 IPR002867 GO:0008270
Trre10g01782 611 FunFam RBR-type E3 ubiquitin transferase 443 554 - -
Trre10g01782 611 CDD RING-HC_ITT1-like 296 355 - -
Trre10g01782 611 ProSiteProfiles TRIAD supradomain profile. 298 529 IPR044066 -
Trre10g01782 611 SMART ibrneu5 370 428 IPR002867 GO:0008270
Trre10g01782 611 SMART ibrneu5 457 523 IPR002867 GO:0008270
Trre10g01782 611 Gene3D Ubiquitin Conjugating Enzyme 99 248 IPR016135 -
Trre10g01782 611 SMART RWD2001b 112 247 IPR006575 GO:0005515
Trre10g01782 611 FunFam RBR-type E3 ubiquitin transferase 297 381 - -
Trre10g01782 611 SUPERFAMILY RING/U-box 548 608 - -
Trre10g01782 611 SMART ring_2 302 349 IPR001841 -
Trre10g01782 611 SMART ring_2 560 589 IPR001841 -
Trre10g01782 611 SMART ring_2 390 478 IPR001841 -
Trre10g01782 611 ProSiteProfiles RWD domain profile. 112 247 IPR006575 GO:0005515
Trre10g01782 611 ProSiteProfiles Zinc finger RING-type profile. 302 346 IPR001841 -
Trre10g01782 611 Pfam RWD domain 108 242 IPR006575 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01782 Trre-Chr10 16261617 16273495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01782 297 520 ARIADNE family AT3G27710 22.917 9.25e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01782 K11971 - gmx:100500662 895.575