Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01778 ATGGAAAGAATATATTGGAGACATTCTAGAAGCCAAGCTAAAGTGGTAGGAACTATAGCATCAATGGGTGGAGCATTTGTTGTCATATTTTACAAGGGTCCACCAATCTTCAAAATACATTCATTAAACAACACACTTCAATTTTCACCAAATTTGAATTGGATTTTGGGAGGGTTGTTATGTGCTGGAGATTCTTTAGCTTCATCCATATGGTACATATATCAGGTTTCAGTAACAAAGAAATACCCTGCTGTAATAGTGATAGTCTTCTTCCAAGTATTTTTTATTGCAATTCAATCAGGAGTATTTGCCTTAATTGTGGTTAGAGATCCAAGTGCTTGGGAACTAAAGCTTGATATGGGATTGGTTGTCATTTTTTATCAGGCAATAGGGGCAATAGGGATTCGGTATTTACTACAAACATGGTGCGTACAAAGAGCTGGTCCTCTGTTTTGTGCTATGTTCAAGCCTGTGGGAATCATCTTCACTGTTTTATTGGGTTCAATTTTTCTAGGAGATGACTTCTATCTTGGAAGGTAA 540 0.3685 MERIYWRHSRSQAKVVGTIASMGGAFVVIFYKGPPIFKIHSLNNTLQFSPNLNWILGGLLCAGDSLASSIWYIYQVSVTKKYPAVIVIVFFQVFFIAIQSGVFALIVVRDPSAWELKLDMGLVVIFYQAIGAIGIRYLLQTWCVQRAGPLFCAMFKPVGIIFTVLLGSIFLGDDFYLGR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01778 179 PANTHER WAT1-RELATED PROTEIN 1 177 IPR030184 GO:0016020|GO:0022857
Trre10g01778 179 SUPERFAMILY Multidrug resistance efflux transporter EmrE 118 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01778 Trre-Chr10 16241807 16244537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01778 1 178 Nodulin-like Gene Family AT3G28070 36.559 1.11e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01778 - - tpra:123906754 329.331