Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01772 ATGGCCATGTATCACCACTACTACTCGAGCACTCAATACAATAAGAAAGACATTGAAGAACAACCTACTTATGTACCACATGATGCACTACAAAATTTGGAATGCTACCCTACTTTTTCAGAAACCTTGGAGGAAAATTTGCAAGGGGATTTGAATTATTTGCTCTTATGTGACACTCATGTGAAAGAAACTCAAGGAAGAACACAAGAGAATATGTCAAATATTCAAATAATTCAAGAGAGCAACATTGATACAAGTTTGCAAGAGGATTTGAATTATTTGATTTCTTGTGACACTAATGAGAAAGAAACTCAAGGAATAACACAAGAGAATGTGTCAAATACTCAAATAATTCAAGAGAGCAATATTGATACAAGTTTGGAAGAGGAATTGAATTATTATCTCTTTTGTGACACTCGTGAGAAAGAAACTCAAGGAATAACACAAGAGAATGTGTCAAATATTCAAATAAATCAAGAGAGCAATATTGATACAAGTTTGGAAGAGGAGTTGAATTATTTGCTCTTTTGTGACACTCATGAAAAAGAAACTCTCAAATTCAATCAATTGAGTGAAGGAATAACACAAGAGAATGTGTCAAATGTTCAAATAAATCAAGAGAGCAATATTGATACAAGTTTGGCTAATATTCCTATGATGAATCATGAGAATCTTCCAAAGAATAACAAGAAGTCTTGTTCTATTAAGAAGAGTAAAGATAAGAGTCTCAAAGTTAAGAGCAAAGATAAATATAAAGACAGAATTTGTAGTCATTGTAAGACTAAAGACACTACTCAATGGAGGTTTGGTCCTTTGGGGAGAAATACTTTATGCAATGCTTGTGGATTGAGATACAAGTCAAATCGATTGATGGAAGGGTATAAACCTAAGGCAAGTTCAAATCTTGATATGTTAAAAGGATTCAGATTTTCACATCTTGTGTGA 945 0.327 MAMYHHYYSSTQYNKKDIEEQPTYVPHDALQNLECYPTFSETLEENLQGDLNYLLLCDTHVKETQGRTQENMSNIQIIQESNIDTSLQEDLNYLISCDTNEKETQGITQENVSNTQIIQESNIDTSLEEELNYYLFCDTREKETQGITQENVSNIQINQESNIDTSLEEELNYLLFCDTHEKETLKFNQLSEGITQENVSNVQINQESNIDTSLANIPMMNHENLPKNNKKSCSIKKSKDKSLKVKSKDKYKDRICSHCKTKDTTQWRFGPLGRNTLCNACGLRYKSNRLMEGYKPKASSNLDMLKGFRFSHLV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01772 314 SMART GATA_3 250 300 IPR000679 GO:0006355|GO:0043565
Trre10g01772 314 Pfam GATA zinc finger 256 291 IPR000679 GO:0006355|GO:0043565
Trre10g01772 314 ProSiteProfiles GATA-type zinc finger domain profile. 250 288 IPR000679 GO:0006355|GO:0043565
Trre10g01772 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 249 295 - -
Trre10g01772 314 PANTHER GATA TRANSCRIPTION FACTOR 161 299 - -
Trre10g01772 314 CDD ZnF_GATA 255 303 IPR000679 GO:0006355|GO:0043565
Trre10g01772 314 Gene3D - 245 303 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01772 Trre-Chr10 16176112 16177056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01772 200 302 C2C2-Gata Transcription Factor Family AT3G45170 36.207 1.18e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre10g01772 GATA 9.7e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01772 - - tpra:123892034 191.43