Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01771 ATGACATTGGTTATCAGAGAAAGAAGACAAAGGCAAGCTCTAAGGCTTTCTTTACCAAAACCTCAAATTCCATCTTCTTCTCATAACTTCCATAACCAAACACAAATGCTGTCATTGATTTCATCACCATCCTCTCATGGAATCAGCAGCCTCTCAGACCTTGAAAAAGTAGCAGTACTTGGCCATGGAAATGGTGGAATAGTCTATAAAGTTCATCACAAGAAGAATAATTCATTTTATGCATTGAAAGTTTTAAACTTTGATCGAAATAGTATTGGATTTCGACAACCACCAACACTAGAAGCTGAGATTCTTAAAAGGGTTGTTGATTCACCTTATATTGTAAGGTGTCATGCAGTTTTTTACAATCATGCATGTGTAACACCGACACTTCAGACTAAAGGCGTGTCTGGTGACCTTAGTTTTGTTATGGAATATATGGAAGGAGGGTCATTGTATGATATCTTGCAACAACATCATAGGCTTCCTGAGGAAGTGATTTGTGTTTTGGCTAAGAGTGTTTTGGAAGGACTAAACTATTTGCATGTTATGAACATTGTTCATAGAGATATTAAACCTTCAAATTTGCTTGTGAATGAAAAAGGGGAGGTGAAAATAGCAGATTTTGGTGTTAGTCATGTAGTGGAAGGTAGATTTGAAGCAAATGATATGAATGCAGGTACATGTGCATATATGAGTCCAGAAAGATTTGATCTTGAAAGATGGGGTGGTGAAAATGTTGATGAATTTGTTGGTGATGTTTGGTCATTAGGTGTTGTAATGTTGGAATGTCTTTTGGGTCATTTTCCTTTCATTGGTCCTCAACAGAGACCTGACTGGGCTACTTTGATGTGTGCAATTTGTTTTGGTGAGAGGCTTGAGATGCCAGAGAAAGCTTCAAAAGAGTTTCAAAGTTTTGTTAGAAGGTGTCTTGAGAAGGATTGGAGGAAGAGAGGAACTGTTTTGGAGCTTCTGAAGCACCCTTTTTTGGAAAGAAACTCTTACTGTTCTATCAAAGGGTTGGGGGATTATATCCTTTGTAGGTGA 1047 0.3773 MTLVIRERRQRQALRLSLPKPQIPSSSHNFHNQTQMLSLISSPSSHGISSLSDLEKVAVLGHGNGGIVYKVHHKKNNSFYALKVLNFDRNSIGFRQPPTLEAEILKRVVDSPYIVRCHAVFYNHACVTPTLQTKGVSGDLSFVMEYMEGGSLYDILQQHHRLPEEVICVLAKSVLEGLNYLHVMNIVHRDIKPSNLLVNEKGEVKIADFGVSHVVEGRFEANDMNAGTCAYMSPERFDLERWGGENVDEFVGDVWSLGVVMLECLLGHFPFIGPQQRPDWATLMCAICFGERLEMPEKASKEFQSFVRRCLEKDWRKRGTVLELLKHPFLERNSYCSIKGLGDYILCR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01771 348 CDD PKc_MAPKK_plant_like 52 330 - -
Trre10g01771 348 ProSiteProfiles Protein kinase domain profile. 54 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01771 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Trre10g01771 348 Gene3D Transferase(Phosphotransferase) domain 1 149 339 - -
Trre10g01771 348 Pfam Protein kinase domain 55 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01771 348 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Trre10g01771 348 SUPERFAMILY Protein kinase-like (PK-like) 52 332 IPR011009 -
Trre10g01771 348 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 23 332 - -
Trre10g01771 348 SMART serkin_6 54 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01771 348 Gene3D Phosphorylase Kinase; domain 1 22 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01771 Trre-Chr10 16168842 16169888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01771 1 331 MAP Kinase Kinase Gene Family AT1G32320 49.550 3.49e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre10g01771 Pkinase 3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01771 K20604 - gmx:100817973 486.493