Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01769 ATGAGTTTTCAGGACATACAATCCGGCCGCCGAAACCTAATCAACGGCAAACAAGACCCGACACAAGCGGTGGCTTCCGGCGTATTCCAGATCAACACCGCCGTATCCACTTTTCAGAGACTCGTTAACACTCTCGGAACCCCCAAAGACACGCCAGAGCTTCGCGAGAAACTGCACAAGACGAGACTTCATATTGGACAATTGGTGAAGGATACTTCTGATAAACTTAAGCAAGCCAGTGAAATTGATCATCATGCTGATGTTAATGCAACCAAGAAAATAGCAGATGCTAAATTGGCCAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCAGCTGAGAGGGAGACAGCTTACACTCCTTTTGTTCCACAAGGAGTTCAGCCATCCAGCTATACAGTCAGCGAAGCAGGTGTTAGTTCCGATAAAAGTCAAGAACAGCAAGCCCTTCTTGTGGAATCCAGAAGACAGGAGGTTATATCCTTAGATAGTGAGATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAACAAGGCATTCAAGAAATCCAGCAGCAGATAGGTGAAGTAAACGAGATCTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGGACCAACATTGAGAATTCTCATGAAGCTACCGTCCAAGCAAAATCGCAACTTGTTCAAGCTTCAAAGACACAAAGATCAAATTCATCTTTGGCGTGCTTGCTTCTGGTGATATTTGGAATCGTGCTTCTCATCATCATCATTATTGTTGCTGCTTAG 807 0.4387 MSFQDIQSGRRNLINGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSDKLKQASEIDHHADVNATKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQGVQPSSYTVSEAGVSSDKSQEQQALLVESRRQEVISLDSEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGTNIENSHEATVQAKSQLVQASKTQRSNSSLACLLLVIFGIVLLIIIIIVAA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01769 268 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre10g01769 268 SMART SynN_4 8 122 IPR006011 GO:0016020
Trre10g01769 268 Gene3D - 15 128 - -
Trre10g01769 268 FunFam Syntaxin-22 like 168 268 - -
Trre10g01769 268 CDD SynN 18 135 IPR006011 GO:0016020
Trre10g01769 268 FunFam Syntaxin-22 like 15 128 - -
Trre10g01769 268 PANTHER SYNTAXIN 22 261 IPR045242 -
Trre10g01769 268 Gene3D - 172 268 - -
Trre10g01769 268 SMART tSNARE_6 170 237 IPR000727 -
Trre10g01769 268 Pfam SNARE domain 212 263 IPR000727 -
Trre10g01769 268 SUPERFAMILY t-snare proteins 17 230 IPR010989 GO:0016020|GO:0016192
Trre10g01769 268 CDD SNARE_Qa 178 236 - -
Trre10g01769 268 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Trre10g01769 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01769 Trre-Chr10 16155872 16159133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01769 1 256 SNARE and Associated Proteins AT5G46860 76.538 1.39e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01769 - - gmx:547656 395.586