Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01757 ATGGAGCTATTTCCAGCACAACCAGATTTATCTTTGCAAATTAGTCCTCCAAACACAAAACCATCAACAACATCAAATTGGAAAAGAACATCAACAGAAGAAGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCTAGAAACTCTTTATCATCATCAAGAAATGATAACTCTTTTGACCTTTCTCTTTCAAATCCAACAAGGTCTTTAGATTCAAACAATAACACTTCTTCAAATAATCTCATTCATCATCACTTCCAAAATAGTGTTAGTAATAATAATGCAAACAACCCTTTTCAATCTTTTCAACAAAATCATTACTTTCAACACCCCCAACAACTCTTTCAACACCACCAGCCACAACATCAACAACATCAAAGCTTAAGCCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAACCCTCCTCTTTTATCATTCCCTCAACTTCATAATCACAATCATAATCTTAATCATCATCTTAATCATGTTTTAGATGGTTCTACTACTACTACTACTAATACTACACCTTCTTCTATTTCTAACACAAACACAAGTTCAAGCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTTCCTGCAAAAAGAAGTATGAGAGCTCCAAGGATGCGTTGGACAACGACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGGGCTACTCCAAAATCAGTTCTTGAGCTAATGGATGTGAAGGATCTTACATTAGCACATGTTAAGTCTCATTTACAGATGTATCGGACGGTGAAAACTACAGATAGAGTAGGAGCTTCATCAGGGCAATCAGATGTATATGATAATGGATCATCTGGAGATAATTCTGATGATATAATGTTTGACATCAATTCTTCAAGAAGATCATCTGAACTATCCATTAAACCTCAAGGAAGATCAAGTGTTAATCAAGATAAGGAATGTTATGGTCTATGGAGCAACTCTTCTAGGGAAGCTTGGTTACATGGTAAACCAAAGATTGATTCTATTGGAAACATGCAATCTCTTGAGAAGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGAAGTTCATCCACAAACTTATCTGGATCAAGCCCTAAGAAACCTAATTTGGATTTGGAATTCACCTTAGGACAACCTTCTCTTTGA 1209 0.3598 MELFPAQPDLSLQISPPNTKPSTTSNWKRTSTEEEMDLGFWKRALDSRNSLSSSRNDNSFDLSLSNPTRSLDSNNNTSSNNLIHHHFQNSVSNNNANNPFQSFQQNHYFQHPQQLFQHHQPQHQQHQSLSQELGFLRPIRGIPVYQNPPLLSFPQLHNHNHNLNHHLNHVLDGSTTTTTNTTPSSISNTNTSSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSELSIKPQGRSSVNQDKECYGLWSNSSREAWLHGKPKIDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPSL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01757 402 Gene3D - 218 275 - -
Trre10g01757 402 SUPERFAMILY Homeodomain-like 216 272 IPR009057 -
Trre10g01757 402 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 401 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre10g01757 402 MobiDBLite consensus disorder prediction 277 303 - -
Trre10g01757 402 MobiDBLite consensus disorder prediction 370 402 - -
Trre10g01757 402 MobiDBLite consensus disorder prediction 371 389 - -
Trre10g01757 402 NCBIfam myb-like DNA-binding domain, SHAQKYF class 219 272 IPR006447 GO:0003677
Trre10g01757 402 MobiDBLite consensus disorder prediction 170 195 - -
Trre10g01757 402 MobiDBLite consensus disorder prediction 48 82 - -
Trre10g01757 402 Pfam Myb-like DNA-binding domain 220 271 IPR001005 -
Trre10g01757 402 FunFam Myb family transcription factor 217 275 - -
Trre10g01757 402 MobiDBLite consensus disorder prediction 1 33 - -
Trre10g01757 402 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01757 Trre-Chr10 15943384 15948711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01757 1 402 G2-like Transcription Factor Family AT4G17695 39.163 7.36e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre10g01757 Myb_DNA-binding 2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01757 - - psat:127119781 585.874