Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01756 ATGGTGGAAGGAGGAAGAGTACGATTGTCCGAGGAAGCTAGAAATGGGTTAGAAGTGTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCCAACACTGTCACGCAGGCGAGTGTTGCTAACATGACGAATAGAAGCGGAGGAGATGCTTTGAGAGCTTCAGCTCCATGTGGTCCAAGATTGCATGGTAATCCGGATGTCTTTTTCAAGAGGAAGGTGGCTAAGTTTGATACAAGTGATTTGGAATGGACTGATAAAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAAGAATTTGAAGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTCTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTCCGTGATTATGAGAAAATGGCGAACAAGGTTTTTGCACGAAGATATTGCAGCGCTGGATGTCTTCCTGCCACTTACTTGGAAAAGGAGTTTTGGCATGAATTTGGTTGCGGGAAAATGGATACCGTTGAATATGCTTGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCTACTGATCAGCTTGGGAACAGCAAGTGGAATTTGAAGAAGCTTTCCCGGTTGCCAAAATCAACTCTACGTCTCTTGGAAACTTCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTATTTAGCATGTTTGCATGGCACGTGGAGGATCATTATTTGTACAGCATTAACTATCAGCACTGTGGGGCGTCAAAAACATGGTATGGTATCCCTGGTCATGCAGCCTTGGAATTTGAAAGGGTGGTGAGGGAACATGTATATTCTACTGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCTTGGGGAAAACAACTTTATTTCCACCTAATATTTTGTTGGAGCATAAAGTCCCTGTCTACAAGGCTGTCCAAAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGAGCGTATCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCACTTGGTGATTGGTTTCCTCTTGGGGCAATTGCGAGCAGGCGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTTTGCAAAGAAGCGATGCTTATTCATACATCCTTGGAACTTGAAGATTCAGGCTTTCCCTCTTCAGACTTGCTTTCTCATAATAGAACAAAGATATCTTTCATTAATTTGTTGCGTTTCCAACATTGTGCCAGTTGGTTACTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCTCATTCACATGGCACAATTCTCTGTAGCCTGTGCAAACGCGACTGTTATATAGCTTATGTTGATTGCAGCTGTCACATGCATCCTGTATGCCTACGCCATGATGTTAAATCTCTTGACTTCACCTGTGGGAGAAAATACACTCTTTATTTGAGAGAGGATATTGCGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAAGAAGATGGGATATTGGATACGATAAGCATGCAATCCAAAAGTGACCGAGATATGTACTCATATCCTTTGTCAGATATGTTTCAGAGAGCCGAAGCAAATGGATACGAACCTTATTGTGAGCTTAAACTTGATTCTATGATTGAATTTTATACCACTCCAGAACAGTCAACAAATAATCAAGAGTATGGCACACAAAGTCAATTTGTTTTGGGACATTGCTCAGAAGTTCATACACCGGAAGCGTCTGAGATTTCCTTTTCTGCTGCATCCACTCTTTGTTCTCTTTCAGAACCTCTTGACTGTTCCTCTGCTCCCAAAAATGCTGAGGAGCAGGCTAACTTGAAAATGGAGATTATTGATTTTGAAGAACTTGGCGAAACAATATCCAACAGTGCATTCAAATCTTCGCTATCCCCTGCTCTGTATCATGAAAGCTCCGCTAAACTGCATGATCTTCAGAAACCGGACACAAAACCCATAGTGGATAACGACAGTGATGATTCTGATTCAGGGATATTTAGGGTAAAGCGACCTTCGTCTCTGAAAGCAGAGAAAAGAAATGCGAAGGTTGCTGCTTCGAAGCATTCTGAGCAGCAGGGACTTAAGCGATTGAAAAAAGTCCTTCCCGAAGGAAAAAGCAGGCAACAAATGAATTTCAGAATCAGTGAATCAAGCTACAAACAAAACCCTGTTAGTCATAAAGTTGATATCGAAATTTCATCGAAGGACAGATTTGCAAGGGGAAATGGTGCTCCCATTTCTGTAAGATATAAAAAGTCAAGCAACGAAGACGCAAGCATCCATATGCAACAAGATCACCACCGGAGAGAGAGGTTTCAGCAAACTTATAGGGAAGCACCTTCCATTGAGACTGGGCCAAAGCGACTTAAAGTCCGAGGCCCTTCATTCTTAGGCTTAGAGAGCAGGCTTTCTAACAATACAGAAATCCAAATGATTGATTCAGGAAGCAGCTGCAAGTTCAAACAATATCCCATTGTTACAGCCCAGTGA 2643 0.42 MVEGGRVRLSEEARNGLEVLKRKRLQRAQSNTVTQASVANMTNRSGGDALRASAPCGPRLHGNPDVFFKRKVAKFDTSDLEWTDKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDYEKMANKVFARRYCSAGCLPATYLEKEFWHEFGCGKMDTVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYSTDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLIHTSLELEDSGFPSSDLLSHNRTKISFINLLRFQHCASWLLMKSRACTSVSSHSHGTILCSLCKRDCYIAYVDCSCHMHPVCLRHDVKSLDFTCGRKYTLYLREDIADMEAAAKMFEQEDGILDTISMQSKSDRDMYSYPLSDMFQRAEANGYEPYCELKLDSMIEFYTTPEQSTNNQEYGTQSQFVLGHCSEVHTPEASEISFSAASTLCSLSEPLDCSSAPKNAEEQANLKMEIIDFEELGETISNSAFKSSLSPALYHESSAKLHDLQKPDTKPIVDNDSDDSDSGIFRVKRPSSLKAEKRNAKVAASKHSEQQGLKRLKKVLPEGKSRQQMNFRISESSYKQNPVSHKVDIEISSKDRFARGNGAPISVRYKKSSNEDASIHMQQDHHRRERFQQTYREAPSIETGPKRLKVRGPSFLGLESRLSNNTEIQMIDSGSSCKFKQYPIVTAQ 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01756 880 Gene3D Cupin 89 438 - -
Trre10g01756 880 FunFam Lysine-specific demethylase isoform A 84 433 - -
Trre10g01756 880 SUPERFAMILY Clavaminate synthase-like 167 422 - -
Trre10g01756 880 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Trre10g01756 880 SMART JmjN_1 88 129 IPR003349 -
Trre10g01756 880 SMART cupin_9 233 406 IPR003347 -
Trre10g01756 880 Pfam C5HC2 zinc finger 486 537 IPR004198 -
Trre10g01756 880 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
Trre10g01756 880 Pfam jmjN domain 90 122 IPR003349 -
Trre10g01756 880 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Trre10g01756 880 MobiDBLite consensus disorder prediction 692 717 - -
Trre10g01756 880 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01756 Trre-Chr10 15890775 15898175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01756 72 545 JUMONJI Transcription Factor Family AT2G34880 31.183 2.10e-61 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre10g01756 JmjC 2.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01756 - - psat:127119779 1538.47