Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01754 ATGGGAGGAGGAAATGTAGTAGTAAACTCAGAATCTCTTTTTTCTTCTCCGATCCATAACCCTAACTTCAACTTCATGTCAACTATGCCTTTTCAACCCTTTCCTTCTTCCATGAAAGAAGAAGATGGAATGTTGAGAGGGAAAGAAGAGATAATGGATCAAAGTGGCTCCGGTAGCGAACAAGTTGAAGATAAGTCGGGGAATGAACAAGAGATTAATAATGAACAAGAAACTACGAAGAAAAAACGTTATCATCGACACACTGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCTCACCCAGATGATAAACAAAGACTGAAACTAAGCCATGATTTGGGATTAAAACCACGGCAAGTTAAATTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCAGATAATGTGATACTTAGAGCAGAAAATGAGAATTTAAAGAATGAGAACTATCGGCTACAAGCGGCGTTACGAAATATTATGTGTCCCAATTGTGGTGGGCCATGTATAATGGGACCTGATATGGGCTTGGATGATCATCAACTTCGACTTGAAAATGCCCGGTTAAGAGAAGAGCTAGATCGTGTGTGTTGTATAACATCAAGATACACTGGTCGTCAAATCCAAACAATGGCACCACCTCAATCTCTTATGCAACCATCATTGGACTTAGACATGAACATATACCCAACAAGACACTTTTCTGATCAAATCACACAATGCTCAGAAATGATTCCTGTTCCTATGTTACCACCTGAAGCTTCACATTTTCAAGATGGTGGTCTCTTATTATTAGAAGATGAGAAATCACTTGCAATGGAACTTGCAGCTTCTTCTATGACTGAACTTGTTAAGATGTGTCAAATGAACGAACCGCTTTGGATTCGAAACGGTGAAAATGATAGGCAAGTTCTTAATTTTGATGAGCATGCTAGACTTTTTTCATGGCCTTTGAATCTTAAGCAGAGAAGTGAGTTGAGGACAGAAGCTACACGTGATTCTGCTGTTGTTATTATGAATAGTGTTACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGAATTGTTTCCAACAATTGTTGCTAGAGCAAGAACTGTTCAAATTATAGCTTCTGGTGCTTCTGGTCATGCAAGTGGAACTCTTCAGCTGATGCATGCAGAATTCCAAGTTCTTTCTCCATTGGTGTCAACTAGAGAGACTCATTTTCTTCGTTATTGTCAGCAAAATGCAGAGGAAGGAACATGGGCTATTGTAGATTTTCCTGTTGAATCCTTCCACCAAAATTTTCACAATTCTTATCCCAAATACTGCAGAAGATCTTCTGGCTGTGTCATTCAAGATATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTTGTAGAGAAACCTGTTCATCAAATATTGAGCAATTATGTGTATAGTGGAATGGCATTTGGCGCGCAACGTTGGTTAGGAGTTTTGCAAAGACAATGTGAAAGGGTTGCTAGCCTCATGGCTAGAAACATATCAGATCTTGGAGTGATACCTTCTCCGGAAGCGCGGAAGAACTTGATGAAACTAGCAAACAGGATGATAAAAACTTTTAGTCTTAATATGACAACTTATGGTGGCCAATCATGGACTGCTATATCAGATTCACCAGAAGACACTGTTAGAATCACAACTCGGAAAATCACTGAGCCTGGCCAACCTAATGGTGTGATTCTTGCTGCGGTTTCAACCACTTGGCTTCCTTATTCTCATACCAAAGTCTTTGATCTCCTCCGCGATGAACGCCACAGATCTCAGATGGATGCACTTTCTAATGGGAACTCATTAAATGAAGTGGCTCATATTGCAAATGGTTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATGTTGCAAGTAACTCATCTCAAAATGTAGAGCTAATGCTGCAAGAGACATGCACAGATCAATCTGGAAGTTTAGTAGTCTACACGACAATCGATGTTGATTCGATCCAGCTAGCAATGAGTGGTGAAGACCCTTCATGCATTTCACTTCTTCCACAAGGATTCATGATAGTACCAATGGATTCATCAAACACTGAGACATCATCTGAACAAGGTGTGACAGGAACACCATCATCAACAACTAGTGCTGCTGCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAACCATCTCTGCAATACCCTGCATCAAATTGAAGGTGCTCTTTGTAGCACCACTAACAACAATTGCTTTGTTGGGTCTTGCAATGAACCAACCACTAGTGCACCTCCCAAGTAG 2385 0.4034 MGGGNVVVNSESLFSSPIHNPNFNFMSTMPFQPFPSSMKEEDGMLRGKEEIMDQSGSGSEQVEDKSGNEQEINNEQETTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENENLKNENYRLQAALRNIMCPNCGGPCIMGPDMGLDDHQLRLENARLREELDRVCCITSRYTGRQIQTMAPPQSLMQPSLDLDMNIYPTRHFSDQITQCSEMIPVPMLPPEASHFQDGGLLLLEDEKSLAMELAASSMTELVKMCQMNEPLWIRNGENDRQVLNFDEHARLFSWPLNLKQRSELRTEATRDSAVVIMNSVTLVDAFLDAQKWMELFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVESFHQNFHNSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVVEKPVHQILSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLANRMIKTFSLNMTTYGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILAAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQETCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCISLLPQGFMIVPMDSSNTETSSEQGVTGTPSSTTSAAANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEGALCSTTNNNCFVGSCNEPTTSAPPK 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01754 794 ProSiteProfiles START domain profile. 273 510 IPR002913 GO:0008289
Trre10g01754 794 MobiDBLite consensus disorder prediction 64 82 - -
Trre10g01754 794 Pfam START domain 283 507 IPR002913 GO:0008289
Trre10g01754 794 Coils Coil 137 167 - -
Trre10g01754 794 MobiDBLite consensus disorder prediction 51 86 - -
Trre10g01754 794 SUPERFAMILY Homeodomain-like 70 139 IPR009057 -
Trre10g01754 794 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Trre10g01754 794 MobiDBLite consensus disorder prediction 702 721 - -
Trre10g01754 794 SMART START_1 282 507 IPR002913 GO:0008289
Trre10g01754 794 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Trre10g01754 794 Gene3D - 328 492 IPR023393 -
Trre10g01754 794 Pfam Homeodomain 81 136 IPR001356 GO:0003677
Trre10g01754 794 SUPERFAMILY Bet v1-like 275 509 - -
Trre10g01754 794 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 77 771 IPR042160 -
Trre10g01754 794 CDD START_ArGLABRA2_like 277 506 - -
Trre10g01754 794 SMART HOX_1 79 142 IPR001356 GO:0003677
Trre10g01754 794 CDD homeodomain 81 139 IPR001356 GO:0003677
Trre10g01754 794 FunFam Homeobox-leucine zipper protein HDG1 66 154 - -
Trre10g01754 794 Gene3D - 65 149 - -
Trre10g01754 794 SUPERFAMILY Bet v1-like 534 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01754 Trre-Chr10 15805641 15811434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01754 1 774 Homeobox Transcription Factor Family AT5G46880 56.370 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre10g01754 START 9.2e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01754 - - psat:127119778 1478.77