Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01753 ATGTATGGTGATTGTCAAGTTATGTCAACAATGGGAGGAGGAAATGTAGTAGTAAACTCAGAATCTCTTTTTTCTTCTCCGATCCATAACCCTAACTTCAACTTCATGTCAACTATGCCTTTTCAACCCTTTCCTTCTTCCATGAAAGAAGAAGATGGAATGTTGAGAGGGAAAGAAGAGATAATGGATCAAAGTGGCTCCGGTAGCGAACAAGTTGAAGATAAGTCGGGGAATGAACAAGAGATTAATAATGAACAAGAAACTACGAAGAAAAAACGTTATCATCGACACACTGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCTCACCCAGATGATAAACAAAGACTGAAACTAAGCCATGATTTGGGATTAAAACCACGGCAAGTTAAATTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCAGATAATGTGATACTTAGAGCAGAAAATGAGAATTTAAAGAATGAGAACTATCGGCTACAAGCGGCGTTACGAAATATTATGTGTCCCAATTGTGGTGGGCCATGTATAATGGGACCTGATATGGGCTTGGATGATCATCAACTTCGACTTGAAAATGCCCGGTTAAGAGAAGAGCTAGATCGTGTGTGTTGTATAACATCAAGATACACTGGTCGTCAAATCCAAACAATGGCACCACCTCAATCTCTTATGCAACCATCATTGGACTTAGACATGAACATATACCCAACAAGACACTTTTCTGATCAAATCACACAATGCTCAGAAATGATTCCTGTTCCTATGTTACCACCTGAAGCTTCACATTTTCAAGATGGTGGTCTCTTATTATTAGAAGATGAGAAATCACTTGCAATGGAACTTGCAGCTTCTTCTATGACTGAACTTGTTAAGATGTGTCAAATGAACGAACCGCTTTGGATTCGAAACGGTGAAAATGATAGGCAAGTTCTTAATTTTGATGAGCATGCTAGACTTTTTTCATGGCCTTTGAATCTTAAGCAGAGAAGTGAGTTGAGGACAGAAGCTACACGTGATTCTGCTGTTGTTATTATGAATAGTGTTACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGAATTGTTTCCAACAATTGTTGCTAGAGCAAGAACTGTTCAAATTATAGCTTCTGGTGCTTCTGGTCATGCAAGTGGAACTCTTCAGCTGATGCATGCAGAATTCCAAGTTCTTTCTCCATTGGTGTCAACTAGAGAGACTCATTTTCTTCGTTATTGTCAGCAAAATGCAGAGGAAGGAACATGGGCTATTGTAGATTTTCCTGTTGAATCCTTCCACCAAAATTTTCACAATTCTTATCCCAAATACTGCAGAAGATCTTCTGGCTGTGTCATTCAAGATATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTTGTAGAGAAACCTGTTCATCAAATATTGAGCAATTATGTGTATAGTGGAATGGCATTTGGCGCGCAACGTTGGTTAGGAGTTTTGCAAAGACAATGTGAAAGGGTTGCTAGCCTCATGGCTAGAAACATATCAGATCTTGGAGTGATACCTTCTCCGGAAGCGCGGAAGAACTTGATGAAACTAGCAAACAGGATGATAAAAACTTTTAGTCTTAATATGACAACTTATGGTGGCCAATCATGGACTGCTATATCAGATTCACCAGAAGACACTGTTAGAATCACAACTCGGAAAATCACTGAGCCTGGCCAACCTAATGGTGTGATTCTTGCTGCGGTTTCAACCACTTGGCTTCCTTATTCTCATACCAAAGTCTTTGATCTCCTCCGCGATGAACGCCACAGATCTCAGATGGATGCACTTTCTAATGGGAACTCATTAAATGAAGTGGCTCATATTGCAAATGGTTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATGTTGCAAGTAACTCATCTCAAAATGTAGAGCTAATGCTGCAAGAGACATGCACAGATCAATCTGGAAGTTTAGTAGTCTACACGACAATCGATGTTGATTCGATCCAGCTAGCAATGAGTGGTGAAGACCCTTCATGCATTTCACTTCTTCCACAAGGATTCATGATAGTACCAATGGATTCATCAAACACTGAGACATCATCTGAACAAGGTGTGACAGGAACACCATCATCAACAACTAGTGCTGCTGCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAACCATCTCTGCAATACCCTGCATCAAATTGAAGGTGCTCTTTGTAGCACCACTAACAACAATTGCTTTGTTGGGTCTTGCAATGAACCAACCACTAGTGCACCTCCCAAGTAG 2415 0.4025 MYGDCQVMSTMGGGNVVVNSESLFSSPIHNPNFNFMSTMPFQPFPSSMKEEDGMLRGKEEIMDQSGSGSEQVEDKSGNEQEINNEQETTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENENLKNENYRLQAALRNIMCPNCGGPCIMGPDMGLDDHQLRLENARLREELDRVCCITSRYTGRQIQTMAPPQSLMQPSLDLDMNIYPTRHFSDQITQCSEMIPVPMLPPEASHFQDGGLLLLEDEKSLAMELAASSMTELVKMCQMNEPLWIRNGENDRQVLNFDEHARLFSWPLNLKQRSELRTEATRDSAVVIMNSVTLVDAFLDAQKWMELFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVESFHQNFHNSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVVEKPVHQILSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLANRMIKTFSLNMTTYGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILAAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQETCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCISLLPQGFMIVPMDSSNTETSSEQGVTGTPSSTTSAAANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEGALCSTTNNNCFVGSCNEPTTSAPPK 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01753 804 SUPERFAMILY Homeodomain-like 80 149 IPR009057 -
Trre10g01753 804 SUPERFAMILY Bet v1-like 285 519 - -
Trre10g01753 804 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 87 781 IPR042160 -
Trre10g01753 804 ProSiteProfiles START domain profile. 283 520 IPR002913 GO:0008289
Trre10g01753 804 CDD START_ArGLABRA2_like 287 516 - -
Trre10g01753 804 Gene3D - 75 159 - -
Trre10g01753 804 Pfam START domain 293 517 IPR002913 GO:0008289
Trre10g01753 804 Gene3D - 338 502 IPR023393 -
Trre10g01753 804 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Trre10g01753 804 CDD homeodomain 91 149 IPR001356 GO:0003677
Trre10g01753 804 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Trre10g01753 804 MobiDBLite consensus disorder prediction 61 94 - -
Trre10g01753 804 SUPERFAMILY Bet v1-like 544 778 - -
Trre10g01753 804 SMART START_1 292 517 IPR002913 GO:0008289
Trre10g01753 804 SMART HOX_1 89 152 IPR001356 GO:0003677
Trre10g01753 804 MobiDBLite consensus disorder prediction 74 92 - -
Trre10g01753 804 Coils Coil 147 177 - -
Trre10g01753 804 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Trre10g01753 804 FunFam Homeobox-leucine zipper protein HDG1 76 164 - -
Trre10g01753 804 MobiDBLite consensus disorder prediction 712 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01753 Trre-Chr10 15805611 15811434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01753 8 784 Homeobox Transcription Factor Family AT5G46880 56.407 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre10g01753 START 9.4e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01753 - - psat:127119778 1498.8