Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01704 ATGCCTTACGAAGATAATCCGTATCGCGATGAGGATGGTGAGCCATTGATGGATTATGACGATATACAATCCGATCGTGAGGCGTCACCGGAGCCACAACAGCTGGACGATTTCGAGGAAGACGTTGATGATTTTCCTGGTCGGGATAGATCACAGACTCCGGTTTACGACACTGATCCATCGAAATCGAAGCCTAGGAAAAGGCTGATTAAGAAAAGTGATACCGGGAAACAGTCTGTGGTGGCGCCGCCGCCGGAGCTTGAGGATGAGTTGGAGGAGGATCGTTTCCGGGCTGATGAGGAGGAAGAAGGGAGGAAGAGGAAGAAAGGGAAGGATGTTGGATCAGGGAAGAAGGAGAAGAGGTTGAAAGGGGAAAAGAGGGTTGGAAGTAGCAGTGGAAAGAGTGGGTCAAAATTTGGGGGTTCGAAGAAAGGGTTTGGTGGTAAAGGTGGGAATGATCATGATGATGGTGAAGTTAAGGAGATGTGGGATACAATTGCTGGAGGAGATTCTGAGGATGATCACGAGGGTAACAGGAATATGGATGACGATAACTTTATTGATGACACTGGAGTGGAACCTGCTATGTATGGTTACGATGAGCCACGTTCTCCTGGTGATGCTCCACAGGCAGAGGAAGGTGAGGAGGAGGATGAAATGAAGGATCTTTTCAAGATGGGTAAGAAAAAGAAGAAAAACGAAAGGAGTCCTGCAGAAATTGCTTTATTAGTTGAGAATGTCATGGCTGAGCTTGAGGTTACAGCAGAAGAGGATGCTGAACTTAATCGCAATAACAAGCCTGCTATTAATAAACTCAGAAAGTTGCCTCTTCTTACCGAAGTCCTCTCAAAGAAACAGCTTCAACTAGAGTTCTTAGATCACGGAGTGTTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGTCTGCCAAATATTAACATAAGGACAGCAATTTTGAAGATTTTGAATGATTTTCCTATAGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAAAGTGGTCTTGGAAAGGTTATTATGTTTTTATCAAGGTCCGATGAAGAAATCAATGTAAATAGGAAATTAGCCAAGGAATTGGTTGATAAATGGAGCCGACCTATATTTAATAAGAGTACTCGGTTTGAAGACATGCGAAATAGTGAAGATGATAGGGTTCCTTACAGGAGGCCATCAGTTAAAAAGCCAGCAAATAAAGCTGCAGGGATGGCATCTAGAGATGGTGATCTTGATTTGGATCTTTCACAAGGGCCTAGATCTGGACAGTCGTCTGCCAGGCAACTTACATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCGTCCCCAATCTAAAATTGATCCTGATGAAATTAGGGCACGTGCAAAGCAATGTTCACAAGACCAGCATCGCATGAAGATGAATAAGAAATTGCAGCAGTTGAGGGCTCCAAAAAAGAAGCAGCTTCAAGCTACAAAGCTGAGTGTGGAAGGTCGTGGTATGGTCAAATACTTGTGA 1530 0.4392 MPYEDNPYRDEDGEPLMDYDDIQSDREASPEPQQLDDFEEDVDDFPGRDRSQTPVYDTDPSKSKPRKRLIKKSDTGKQSVVAPPPELEDELEEDRFRADEEEEGRKRKKGKDVGSGKKEKRLKGEKRVGSSSGKSGSKFGGSKKGFGGKGGNDHDDGEVKEMWDTIAGGDSEDDHEGNRNMDDDNFIDDTGVEPAMYGYDEPRSPGDAPQAEEGEEEDEMKDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRNNKPAINKLRKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQYDRREQLKKSGLGKVIMFLSRSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNSEDDRVPYRRPSVKKPANKAAGMASRDGDLDLDLSQGPRSGQSSARQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQCSQDQHRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMVKYL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01704 509 ProSiteProfiles TFIIS N-terminal domain profile. 298 381 IPR017923 -
Trre10g01704 509 MobiDBLite consensus disorder prediction 1 33 - -
Trre10g01704 509 MobiDBLite consensus disorder prediction 1 219 - -
Trre10g01704 509 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 237 384 IPR035441 -
Trre10g01704 509 MobiDBLite consensus disorder prediction 148 186 - -
Trre10g01704 509 MobiDBLite consensus disorder prediction 426 441 - -
Trre10g01704 509 Pfam TFIIS helical bundle-like domain 323 378 IPR017923 -
Trre10g01704 509 MobiDBLite consensus disorder prediction 98 128 - -
Trre10g01704 509 PANTHER PROTEIN IWS1 HOMOLOG 1 1 509 IPR044204 GO:0009742|GO:0032784
Trre10g01704 509 MobiDBLite consensus disorder prediction 389 449 - -
Trre10g01704 509 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 293 385 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01704 Trre-Chr10 15038064 15041690 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Trre10g01704 Med26 5.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01704 K17498 - gmx:100801805 787.334