Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01680 ATGGCAGATAGTCCAGTTTCATTTTTATTGGACAGGTTGACTTGGTTACTTCAAGAGGAAGTAAATCTACAAAGAGGCGTCCGTGAAGATGTTCGATACATCAAAGACGAACTTGAACGCCACAAAGCTATATTAATGGTAGCTGATTCATTGGAAGACAAAGATCCTGAACTCAAAGTATGGGTTAGAAGGGTAAGAGATATTGCTCTTGACATGGAAGATGCTATAGATGAATACAATCTCCGCCTTGTCTATCATCAACAAGGTAACACCAATTCTTCTTTTCATAAGATTGTTTTTGGCATCAAGACATTGAAAGCTAGGCACCAAATAGCTTCAAATATACAAGGAATCAAATCCAAAGTTGAAGTTATTTCGCAAAGACGTCCGATCATATCTGATGTAGCTTCAATCTCAAGTCAAAGGCGACTTGATAGTCAAGGTAATGCCCTTTTGCTAGAGGAAGCTGATTTAGTTGGAATTGAACAACCAAAGAAGCAGTTAAGTGATTTGCTTTTCAAAGATGAATCAAATAGGGCTGTTATTTCAATCTATGGTATGGGAGGTTTAGGGAAGACAACATTGGCAAAACAAGTCTATGATGATCCAAAAGTCAAAAAACATTTCAGGATTCATGCTTGGGTTAATCTCTCACAATATTTCAAAATGGAAGAGCTATTGAAAGACCTTGTTCAACAACTTTATAGTGTTATTGGTAAACCAGTTCCAGAAGCTGTTGGAATGATGAACAGTGACAAGGTAAAAGAGTTGATCAAGAATTTGCTTCTGAGAAGTAGGTACCTCATTGTGCTTGATGATGTGTGGCAGGTGAATGTATGGGATGCTGTGAAGCTTGCTTTGCCTAATAACAACCGCGGAAGTAGAGTGATTCTTACGACGCGCAAGAGAGATGTAGCTTTGTATTCTCGTGCTGAATTAGGTAAGGATTTTCCCCTTCAATTCTTACCTGAGCAAGAAGCTTGGTCACTTTTTTGTAGGAAGACATTTCAAGGTAACTCATGTCCTCCTCATCTTGAAGAAGTTTGTCGGAAGATCTTAAAATTGTGTGGAGGGTTGCCACTAGCAATTGTGGCAATCAGTGGTGCTTTGGCTACTAAAGAAAGATCAAACATAGAAGAATGGCAGATAGTTTGCAGAAGTTTTGGATCAGAAATTAAAGGAAATGACAAATTAGAGGATATGAAGAAAGTACTTTCCTTAAGTTTCAATGAGTTGCCTTACTATCTTAAATCATGTCTGTTATATTTAAGCGTCTTCCCCGAATTTCATGCTATCGAGCATATGAGATTGATTCGATTGTGGATAGCTGAAGGGTTTGTAAATGGTGAAGATGGTAAGACACTGGAGGAAGTTGCAGATAGTTACCTTAAGGAGCTTTTGAACAGAAGTTTTCTCCAAGTGGTAGAAAAAACCAGTGATGGAAGAATGAAGACTTGTCGCATGCATGACCTTCTACGGGAAATTGTCAATTATAAGTCAAGAGATCAAAACTTTGCAACAATAGCCAAAGAACAAGATATGGAATGGACGGAACAAGTTCGTCGTTTGTCGGTCATAAATTCATTACATAATGTACTTAAACAGAATAAGACCATATTCAAACTTAGGTCTCTGCTAATGTTTGCATTATCAGATTCACTAAATCATTTTTCTATCCATGATTTATGTTCCTCCACTGGTGTTAAGTTGCTCAGGGTGTTAGATTTGCAGGATGCACCTTTGGAGGCTTTTCCTACTGAAATTGTCAAACTTTACCTTCTGAAGTATCTAAGTTTGAAGAATACAAAGGTGAAAAGCATTCCAAGTTCCATTAAGAAGCTGCAGAACCTAGAGACATTGGATCTTAAACACACTTATGTCACTGAATTGCCTATTGAAATTGCCGAGCTGAAACGATTACGCCATCTTCTGGTGTATCGTTACGATATTGAATCCTATGCCCATTTCCATGCAAAGCATGGATTCAAAGTGGCTGCACCTATAGGAAACATGCAATCATTGCAAAAGCTTTGTTTCATAGAGGTAGATCAAGGAAGTGGAGCATTGATGGTTGAGTTAGGAAAACTTACTCAGCTTAGGAGGCTAGGCATTAGAAAAATGAGGAAAGAAGATGGTGCTGCTTTGTGTTCATCTATTGAGAAAATGATCCATCTTAGATCACTTTCCATAACTTCAATAAAAGAAGATGAGATAATCGATATTCACGATATTTCAAAGCCACCTCAATGTCTTCAACAGTTATACTTGAGTGGATGTTTAGAGAAGTTTCCACAATGGATAAAATCGTGCAATAATTTAGTCAAAGTTTTCTTGAAATGGAGCAGGTTAAAGGAGGATCCACTGATGTATCTTCAAGGTTTACCAAATCTTCGACATCTTGAGTTTCTTCAAGTTTATGTTGGCGAGACATTGCATTTCAACGCAGAAGGGTTTCCAAGTCTAAAGGTATTAGGCCTCGATGATTTACAAGGACTAAAATATATGATAATTGAAGAAGGAGCAATGCAAGGTCTAAAAAAGTTGATCATTCAACGTTGCGGTTCGTTCAAGCATGTACCATTAGGCCTTGAACACCTAACTAAGCTAAAAACAATTGAGTTCTTTGATATGCCTGATGAATTGGTTATTTCACTGCTTCCAAATGGAGGCAAGGATTATTGGAGAGTACAAAATGTTCCAACAGTTTATTCTACTTATTGGAGGGATGGTGGTTGGGATGTTTATTCATTAGAGACTTTTGGGGAGAGAGAGACTGATGTCAATCATAGTAGTGCTAAGAGGACTCTTGAGCTTCCTACTCTTTGGAAGGTTTAA 2835 0.3781 MADSPVSFLLDRLTWLLQEEVNLQRGVREDVRYIKDELERHKAILMVADSLEDKDPELKVWVRRVRDIALDMEDAIDEYNLRLVYHQQGNTNSSFHKIVFGIKTLKARHQIASNIQGIKSKVEVISQRRPIISDVASISSQRRLDSQGNALLLEEADLVGIEQPKKQLSDLLFKDESNRAVISIYGMGGLGKTTLAKQVYDDPKVKKHFRIHAWVNLSQYFKMEELLKDLVQQLYSVIGKPVPEAVGMMNSDKVKELIKNLLLRSRYLIVLDDVWQVNVWDAVKLALPNNNRGSRVILTTRKRDVALYSRAELGKDFPLQFLPEQEAWSLFCRKTFQGNSCPPHLEEVCRKILKLCGGLPLAIVAISGALATKERSNIEEWQIVCRSFGSEIKGNDKLEDMKKVLSLSFNELPYYLKSCLLYLSVFPEFHAIEHMRLIRLWIAEGFVNGEDGKTLEEVADSYLKELLNRSFLQVVEKTSDGRMKTCRMHDLLREIVNYKSRDQNFATIAKEQDMEWTEQVRRLSVINSLHNVLKQNKTIFKLRSLLMFALSDSLNHFSIHDLCSSTGVKLLRVLDLQDAPLEAFPTEIVKLYLLKYLSLKNTKVKSIPSSIKKLQNLETLDLKHTYVTELPIEIAELKRLRHLLVYRYDIESYAHFHAKHGFKVAAPIGNMQSLQKLCFIEVDQGSGALMVELGKLTQLRRLGIRKMRKEDGAALCSSIEKMIHLRSLSITSIKEDEIIDIHDISKPPQCLQQLYLSGCLEKFPQWIKSCNNLVKVFLKWSRLKEDPLMYLQGLPNLRHLEFLQVYVGETLHFNAEGFPSLKVLGLDDLQGLKYMIIEEGAMQGLKKLIIQRCGSFKHVPLGLEHLTKLKTIEFFDMPDELVISLLPNGGKDYWRVQNVPTVYSTYWRDGGWDVYSLETFGERETDVNHSSAKRTLELPTLWKV 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01680 944 CDD RX-CC_like 2 126 IPR038005 -
Trre10g01680 944 Gene3D - 5 112 - -
Trre10g01680 944 FunFam Probable disease resistance protein At1g61300 143 313 - -
Trre10g01680 944 Gene3D - 138 312 IPR027417 -
Trre10g01680 944 Pfam NB-ARC domain 162 410 IPR002182 GO:0043531
Trre10g01680 944 Gene3D Ribonuclease Inhibitor 525 888 IPR032675 -
Trre10g01680 944 SUPERFAMILY L domain-like 487 880 - -
Trre10g01680 944 PANTHER DISEASE RESISTANCE PROTEIN RP 32 856 IPR044974 GO:0006952
Trre10g01680 944 PRINTS Disease resistance protein signature 261 275 - -
Trre10g01680 944 PRINTS Disease resistance protein signature 356 370 - -
Trre10g01680 944 PRINTS Disease resistance protein signature 181 196 - -
Trre10g01680 944 PRINTS Disease resistance protein signature 612 628 - -
Trre10g01680 944 FunFam Probable disease resistance protein At1g63360 409 498 - -
Trre10g01680 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 423 IPR027417 -
Trre10g01680 944 Pfam Rx N-terminal domain 6 94 IPR041118 -
Trre10g01680 944 Gene3D - 321 408 IPR042197 -
Trre10g01680 944 Gene3D - 409 499 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01680 Trre-Chr10 14850790 14853837 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01680 159 375 WRKY Transcription Factor Family AT5G45050 25.346 2.37e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01680 K13457 - gmx:100305458 1463.74