Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01679 ATGGGTAAGAAGAACGGCGCCGTGGTAGCCACCGAAGCAGTGGCCGAAGAACAAACCAATAACAACAACAACAACACAGAACTCAAATCTTCGAAGAAGAACAAAAAGAACAAGAACAAATACAATCTTCAAACCGAAGAAAACACTCCCAAAAGAAAGCACGAAGAACTCAACAATCAAAACGACACCGAATCGGAGAAGAAAAGTAAGAAGAAGAAAAAGCACAACAAATCGGATGAAAATGACTCAGGTAACGGCGTTGAGACGGTTTCTGCATCGGATGAACCGATTACGGTTACCGGAAAGAATGCCAAAGATGAGAAATATGCGGCGGTTAAAACTTTTGTTGGTTCGGGACTTCCTGATAATGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGAGCTTGGCCTTTTTTATTGGATGGTCGTGATTTGATTGGAATTGCAGCTACTGGTTCAGGAAAGACACTTGCTTTTGGACTACCAGCTATTATGCATGTTTTGAATAAGCGGAAGAATAAGGTTTCTTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACAAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAGTCTTGTGGCGTGGAGTCAATTTGTTTGTATGGTGGAACCTCCAAAGGACCACAAATCTCTGCACTTAAATCTGGCGTTGATATTGTCATTGGAACCCCAGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGTCTACAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTTGGCCAGACATGTTCTGCTCGTCAAATGGTCATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTTAAAGTTGTTGTAGGGTCAGAGGATTTATCTGCCAATCATGATGTCATGCAGATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATATCACAAATCTCAAAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCACACGAGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAAGCGGTGTCAATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGCAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAAGCAAATAAGGGACTTTCTGGTGAGCTTGTGAATGTCTTAAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGATGATGAAGACTAA 1602 0.417 MGKKNGAVVATEAVAEEQTNNNNNNTELKSSKKNKKNKNKYNLQTEENTPKRKHEELNNQNDTESEKKSKKKKKHNKSDENDSGNGVETVSASDEPITVTGKNAKDEKYAAVKTFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKNKVSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESICLYGGTSKGPQISALKSGVDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTQANKGLSGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01679 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 320 IPR014001 -
Trre10g01679 533 MobiDBLite consensus disorder prediction 83 98 - -
Trre10g01679 533 SMART helicmild6 376 457 IPR001650 -
Trre10g01679 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 496 IPR001650 -
Trre10g01679 533 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 67 492 - -
Trre10g01679 533 MobiDBLite consensus disorder prediction 14 28 - -
Trre10g01679 533 Gene3D - 60 323 IPR027417 -
Trre10g01679 533 Pfam Helicase conserved C-terminal domain 349 457 IPR001650 -
Trre10g01679 533 FunFam ATP-dependent RNA helicase RhlB 323 500 - -
Trre10g01679 533 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 266 274 IPR000629 -
Trre10g01679 533 CDD SF2_C_DEAD 334 466 - -
Trre10g01679 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 469 IPR027417 -
Trre10g01679 533 CDD DEADc 129 321 - -
Trre10g01679 533 Gene3D - 324 499 IPR027417 -
Trre10g01679 533 MobiDBLite consensus disorder prediction 39 82 - -
Trre10g01679 533 MobiDBLite consensus disorder prediction 1 99 - -
Trre10g01679 533 Coils Coil 54 74 - -
Trre10g01679 533 SMART ultradead3 130 337 IPR014001 -
Trre10g01679 533 Pfam DEAD/DEAH box helicase 136 305 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01679 Trre-Chr10 14843150 14848569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01679 112 465 Eukaryotic Initiation Factors Gene Family AT3G19760 33.146 3.82e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01679 K14811 - gmx:100806057 797.349