LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g01676	ATGGCAGATAGTTCAGTATCATTTTTATTGGACAAATTGTCTTGGTTACTTCAAGAAGAAGTAAACCTACAAAAAGGGGTCCGTGAAGATGTTCAATACATCAAAGATGAACTCGAACGCCACAAAGCCATCTTGATGGCAGCTGATTCATTGGAAGACAAAGATCCTGAACTAAAAGTATGGGTTAAAAGTGTAAGAAATATTGCTGAAGACATGGAAGATGCTATAGATGAATACAATCTTCGTCTTGTTGATCATCATCAACAAAGTAAGAACAATTCTCCTATTCATAAGCTTGGTTTTGTGATCAAGACTATGAAAGCTAGACACAGAATAGCTAGAGATATACAAGGAATCAAATCAAAAGTTGAAACTATCTCTAATGGACGTCGTCCAAACATATCTGGTGTAGGTTCAAGCTCAAGTCAAAGGCGTTCATCAAGGCTTGATAGTCAAGGTGATGCCCTTTTGCTAGAGGAAGCTGATTTAGTTGGAATTGAAGAACCAAAGAAGCAACTTTGTGATCTGCTGTTCAAAGATGAAACAAAGAGAGCTGTGATTTCAATCTATGGTATGGGAGGTTTAGGGAAGACAACATTGGCAAAACAAGTCTATGAAGATCCAAAAGTAAAGAAACATTTCAGGATTCATGCTTGGGTTAATCTCTCTCAATCATTCAGAATGGAAGAGGTACTGAAAGACCTTGTACAACAACTCCATAATGTTATTGGAAAACCAGCTCCAGAATCAATTGGAATGATGAAAATTGCCAATTTGAAAGAGTTTATCAAGAATTTTCTTCAGAGAAGTAAAAAGTATCTAATTGTGCTTGATGATGTGTGGAGTGTGAATGTATGGGATGCTGTGAACCATGCTTTGCCTAATAACAACTGCGGCAGTAGAGTGATTCTTACGACGCGCAAGAAAGATATAGCTTTGTATTCTTGTGCAGAATTGGGTAAGGATTTTCTTTTTCCCCTTGATTTCTTACCAAAGCAAGAAGCTTGGTCACTTTTTTGTAGGAAGACATTTCAAGGCAACTCATGTCCTCCACATCTTGAAGAAGTTTGTAGGAAGATCTTGAAATTGTGTGGAGGGTTGCCATTAGCAATTGTGGCAATCAGTGGTGCTTTGGCTACAAGAGAAAGATCAAACATAGAAGAGTGGAACATGGTTTGCAGAAGTTTTGGTTCTGAAATTGAAGGCAATGACATATTGGAAGTTATGAAGAAAGTACTTTCCTTAAGTTTCAATGAATTGCCTTACTATCTTAAATCATGTTTGATGTATTTAACCGTCTTCCCCGAATTTCACGCTATCGAGCATATGAGATTGATTCGATTGTGGATAGCTGAAGGGTTTGTGAAAAACGAAGATGGTAAGACACCGGAGGAAGTTGCAGATAGTTACCTTAAGGAGCTTTTGAACAGAAGTTTAATCCAAGTGGTAGAAAAAACAAGTGATGGAAGGATGAATACATGTCGGATGCATGGTCTTACAAGGGAAATTGTTAATTTGAAGTCAAGAGATCAGAACTTTGCAACAATAGCCAAAGATAACGACATGGTATGGCCGGAACGAGTTCGTCGATTGTCGGTGATAAATTCATCACAAAGTGCATTACAACAAAATCAGACTACATTTCATCTTAGGTCTCTGCTAATGTTTGCATTATCAGATTCACCTAATCATTTTTCTATGCATGAATTATGCACCTCGAGTGGTGTTAAGTTGCTCAATGTGTTAGATTTGCAAGATGCACCTTTGGAGGCTTTTCCTGCTGAAATTGTCAACCTTTACCTTTTGAAGTATCTAAGTTTAAAGAATACAAAGGTTAAAAACATTCCAGGATCGATTAAGAAGCTGCAATACCTGGAGACCTTGGATCTTAAACACACTTATGTCACTGAATTGCCTGCTGAAATTGCGGAGCTGAAACGATTACGCCATCTTCTGGTGTATCGTTACGAGATTGAATCATATGCTCATTTCGACTCAAGGCATGGCTTCAAGGTGGCTGCACCTATAGGAAACATGCTATCTTTGCAAAAGCTTTGTTTCATAGAGGTAGATCAAGGAAGTGGAGCATTGATGGTTGAGTTAGGAAAACTTACTCAACTTAGGAGGCTAGGCATTAGAAAAATGAAGAAAGAAGATGGTGCTGCTTTGTGTTCATCAATTGAGAAGATGGTCAATCTTACATCACTATCCATAACTGCAATAAATGAAGATGAGATAATTGATATTCACAGCATTTCAAAGCCTCCTCAGTATCTTCAGAAGTTATACTTGAGCGGACGTTTAGAGAAGTTTCCACAATGGATAAAATCTTGCAAGAATTTAGTCAGAGTTTTCTTAAAATGGAGCAGGTTAAAGGAGGATCCTCTGGTGTATCTTCAAGATTTGCCAAATCTTCGACATCTTGAGTTTCTTCAAGCTTATGTTGGTGAGACATTGCAATTCAATGCAAAAGGGTTTTCAAGTCTGAAGGTGTTAGGCCTTGATGATTTCGAAGGACTAAAATATATGATAATTGAGGAAGAAGCAATGCAAGGTCTTAAAAAGTTGGTCATTCAGCAATGTGGCTCATTCAAGAATGTACCATTGGGCATTGAACACTTAACTAAGCTAAAAGCAATTGAGTTATTTGATATGCCTAAAGAATTGATTATGGCAATGCGTCCAAATGGAGGTGAAGATTATTGGAGAGTACAGAATGTTCCAACAATTTATTCTACTTATTGGAGGGATCGTGGTTGGGATGTTTATCCAATAAAGACTTTTGGGGAGATAGAGAGTGATATCGATCATAGCTGTGCACTGAGGACTCTTCAGCTTCCTACTCTTTCGAAGGTTTAA	2859	0.3781	MADSSVSFLLDKLSWLLQEEVNLQKGVREDVQYIKDELERHKAILMAADSLEDKDPELKVWVKSVRNIAEDMEDAIDEYNLRLVDHHQQSKNNSPIHKLGFVIKTMKARHRIARDIQGIKSKVETISNGRRPNISGVGSSSSQRRSSRLDSQGDALLLEEADLVGIEEPKKQLCDLLFKDETKRAVISIYGMGGLGKTTLAKQVYEDPKVKKHFRIHAWVNLSQSFRMEEVLKDLVQQLHNVIGKPAPESIGMMKIANLKEFIKNFLQRSKKYLIVLDDVWSVNVWDAVNHALPNNNCGSRVILTTRKKDIALYSCAELGKDFLFPLDFLPKQEAWSLFCRKTFQGNSCPPHLEEVCRKILKLCGGLPLAIVAISGALATRERSNIEEWNMVCRSFGSEIEGNDILEVMKKVLSLSFNELPYYLKSCLMYLTVFPEFHAIEHMRLIRLWIAEGFVKNEDGKTPEEVADSYLKELLNRSLIQVVEKTSDGRMNTCRMHGLTREIVNLKSRDQNFATIAKDNDMVWPERVRRLSVINSSQSALQQNQTTFHLRSLLMFALSDSPNHFSMHELCTSSGVKLLNVLDLQDAPLEAFPAEIVNLYLLKYLSLKNTKVKNIPGSIKKLQYLETLDLKHTYVTELPAEIAELKRLRHLLVYRYEIESYAHFDSRHGFKVAAPIGNMLSLQKLCFIEVDQGSGALMVELGKLTQLRRLGIRKMKKEDGAALCSSIEKMVNLTSLSITAINEDEIIDIHSISKPPQYLQKLYLSGRLEKFPQWIKSCKNLVRVFLKWSRLKEDPLVYLQDLPNLRHLEFLQAYVGETLQFNAKGFSSLKVLGLDDFEGLKYMIIEEEAMQGLKKLVIQQCGSFKNVPLGIEHLTKLKAIELFDMPKELIMAMRPNGGEDYWRVQNVPTIYSTYWRDRGWDVYPIKTFGEIESDIDHSCALRTLQLPTLSKV	952

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g01676	952	PRINTS	Disease resistance protein signature	620	636	-	-
	Trre10g01676	952	PRINTS	Disease resistance protein signature	186	201	-	-
	Trre10g01676	952	PRINTS	Disease resistance protein signature	364	378	-	-
	Trre10g01676	952	PRINTS	Disease resistance protein signature	267	281	-	-
	Trre10g01676	952	CDD	RX-CC_like	2	128	IPR038005	-
	Trre10g01676	952	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	158	431	IPR027417	-
	Trre10g01676	952	FunFam	Probable disease resistance protein At1g61300	152	318	-	-
	Trre10g01676	952	Gene3D	-	5	113	-	-
	Trre10g01676	952	Pfam	NB-ARC domain	167	418	IPR002182	GO:0043531
	Trre10g01676	952	Coils	Coil	62	89	-	-
	Trre10g01676	952	Gene3D	-	417	507	IPR036388	-
	Trre10g01676	952	PANTHER	DISEASE RESISTANCE PROTEIN RP	33	864	IPR044974	GO:0006952
	Trre10g01676	952	Pfam	Rx N-terminal domain	6	93	IPR041118	-
	Trre10g01676	952	FunFam	Probable disease resistance protein At1g63360	417	505	-	-
	Trre10g01676	952	Gene3D	-	330	416	IPR042197	-
	Trre10g01676	952	Gene3D	-	152	317	IPR027417	-
	Trre10g01676	952	SUPERFAMILY	L domain-like	505	889	-	-
	Trre10g01676	952	Gene3D	Ribonuclease Inhibitor	535	890	IPR032675	-
	Trre10g01676	952	MobiDBLite	consensus disorder prediction	127	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g01676	Trre-Chr10	14824282	14827759	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g01676	187	633	WRKY Transcription Factor Family	AT5G45050	21.649	1.19e-07	53.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g01676	K13457		-	gmx:100305458	1400.19