Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01673 ATGGATCGATTATCTCAAATTAATTTAAATGAAGGGGCTTCAATTCAAGTCCCCTCTGAGAATAGCATTGAACAACCACGACAAAATCTCGACACTGATATGATTGAGTCGGATAGTGAGACCGTGATTGTAAACTCTAATGAAAGAGATAGAATAATTGAACTCGAATCAATATCCGAAGAAACTCATGAGACCGCGGCAAATAGAATAATTGAACTCGAGTCAATACCCGAAGAAACTCAGGCCGCGGCAAATAGAGCGCATAGAAAAAGGAAACATTGGAAAGAAGATGAACACAGGCAATTTTTGAAAGGGCTGAAAAAATATCAAAGGGGACAATGGAAAGAGATTTCACAAGAATTTGTGACGACAAGAACTCCAAGTCAAATTGCTAGCCATGCTCAAAAATATTATGATCGCCAAGATCTCGAGCAAAAAGAGAGAAAGAAAAGAAGAAGTATTCATGACACAACCATCGACAACAATGGTAGAATAGTCACTCTCCCTATTAAAAAACAAAATGAGATTCCTATTGCACAAGAAATTGATGAAATTCCTTCAATTGAACAACAAAATAATACTTCTTCTTTGGTCACTCAGCCTATTGATGAACAAAATGAGATTCCTTCTCACGGCACAACTTTAAATGATAGCAACAATGGCGACTTGGTCACTCCACCTATTGAGCCATTGCAAGGAATGCAGCAAGAACATCCACAACTTGAGTGCACAATTCGTACGCGTGATATTTTGCCGCAAGATATGAATAATGTCATCAAGATGTGCGAATTGCTGGAACAAATCTTAAAAAGATGA 816 0.3775 MDRLSQINLNEGASIQVPSENSIEQPRQNLDTDMIESDSETVIVNSNERDRIIELESISEETHETAANRIIELESIPEETQAAANRAHRKRKHWKEDEHRQFLKGLKKYQRGQWKEISQEFVTTRTPSQIASHAQKYYDRQDLEQKERKKRRSIHDTTIDNNGRIVTLPIKKQNEIPIAQEIDEIPSIEQQNNTSSLVTQPIDEQNEIPSHGTTLNDSNNGDLVTPPIEPLQGMQQEHPQLECTIRTRDILPQDMNNVIKMCELLEQILKR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01673 271 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Trre10g01673 271 SMART sant 90 140 IPR001005 -
Trre10g01673 271 MobiDBLite consensus disorder prediction 125 158 - -
Trre10g01673 271 CDD SANT 94 137 IPR001005 -
Trre10g01673 271 Gene3D - 92 143 - -
Trre10g01673 271 PANTHER TRANSCRIPTION FACTOR KUA1 47 236 - -
Trre10g01673 271 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Trre10g01673 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Trre10g01673 271 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Trre10g01673 271 MobiDBLite consensus disorder prediction 137 158 - -
Trre10g01673 271 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Trre10g01673 271 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01673 Trre-Chr10 14801322 14802963 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g01673 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01673 - - tpra:123904276 259.61