Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01669 ATGGGTAACTCACACGGACATCATCATCGCAAACACCGTTTTTCTGTTCCAAACAATACGGTTCCTCCTCCACCTTATAAATACGGTGGTAGTGGTACTTCTCAAATTCATAATCCACCAAACAATTCAAACAACAACATCATGGTTTCTTTGCCTTATGCCAACGCTGACGTCACTCTCCGTTCCCTCGCTGCTCAGGCTGAAGGCTTTGGCCGCTTCGCTACCGGTGGATTTCATGGTTCTCTTTATCATGTCACATCACTCTTAGACGATGGACCGGGATCATTGCGTGATGCATGTCGCAAAAAAGAGCCTTTGTGGATTGTATTTGAGGTTTCGGGTACAATTCAACTTTCGTCTTACTTAAGTGTATCATCATACAAGACCATTGATGGAAGGGGTCAAAGGATTAAGCTGACTGGAAAGGGTTTTCGGCTGAAGGAATGTGAACATGTAATCATTTGTAATTTAGAGATCGAAGGAGGCAGAGGACCTGATGTCGATGCTATTCAGATTAAACCTAATTCAAAACACATATGGATAGATCGTTGCACTCTCAGTGATTTTGAAGATGGACTCATTGATATCACTCGAGGAAGCACTGATATTACAATTTCAAGGTGTCACTTTCATCAACATGATAAAACAATACTCATTGGATCAGATCCGAAACATGTTGATGATAGATGCATGAAGATCACCATACACCACTGTTTTTTCAATGGTACTCGACAAAGGCATCCTCGTGTTAGGTTCGCAAAAGTACATCTGTACAACAATTACACCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTTGAATCCCAGATATTCTCTCAACATAATATCTATGAAGCGGGCCAGAAGAAGGTTGCTTTTAAGTATCTTCATGAGAAGGCAGCAGACAAGGAAGCTGAAGCAACTGGACACATAATTTCTGAAGGAGATTTATTTTTAAATGGTGCTCAACCAGGGTTGATGACAGAGAATGTTGGGGTTAAGGTGTTTCATCCGAGCGAACACTATCTCACATGGACAGTGGGACATCCTACAGATGATCTAAAGCAAGTTCTTCATCACTGTACTGGATGGCAATCTGTTGCGAGGCCAGCCGATCAAGCCGTTTGCGCAGAATAA 1140 0.4211 MGNSHGHHHRKHRFSVPNNTVPPPPYKYGGSGTSQIHNPPNNSNNNIMVSLPYANADVTLRSLAAQAEGFGRFATGGFHGSLYHVTSLLDDGPGSLRDACRKKEPLWIVFEVSGTIQLSSYLSVSSYKTIDGRGQRIKLTGKGFRLKECEHVIICNLEIEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRGSTDITISRCHFHQHDKTILIGSDPKHVDDRCMKITIHHCFFNGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLHEKAADKEAEATGHIISEGDLFLNGAQPGLMTENVGVKVFHPSEHYLTWTVGHPTDDLKQVLHHCTGWQSVARPADQAVCAE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01669 379 MobiDBLite consensus disorder prediction 1 15 - -
Trre10g01669 379 PANTHER PECTATE LYASE 18-RELATED 55 324 IPR045032 GO:0030570
Trre10g01669 379 MobiDBLite consensus disorder prediction 1 43 - -
Trre10g01669 379 Gene3D - 52 350 IPR012334 -
Trre10g01669 379 SMART amb_all 93 291 IPR002022 -
Trre10g01669 379 SUPERFAMILY Pectin lyase-like 66 372 IPR011050 -
Trre10g01669 379 Pfam Pectate lyase 121 284 IPR002022 -
Trre10g01669 379 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Trre10g01669 379 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Trre10g01669 379 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01669 Trre-Chr10 14767484 14770207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01669 88 376 Polysaccharide Lyase AT3G55140 74.740 5.90e-166 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01669 K01728 - gmx:100814368 626.706