Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01668 ATGGCTGCAAATCTAAACTTCAAAATGCCACAAAACACCATCACTCATCCTCATTGGTATTCATCAAAAACTGGAATTTACAATAGTATACACTCACCTAGAATTAGGAACCTTCCGACAGATCCTTTTCTCGATGTTGTTTCCTTCATTTTTTCTCACCCTCATGATGGGGTTTTGGCCCTTATTGATCACTCAACTGGGTCTTCTATTTCTTACTCAAAGTTGTTACCTTTAGTCAAATCAATGGCTTCTGGTCTTCAAAAAATGGGTGTTTCAAAAGGTGATGTTGTTTTGCTTCTACTTCCAAATTCAATTTACTATCCCATTGTACTATTAGGTGTTATGTATTTAGGTGCTATTGTTACAACATTGAATCCTCTAAGTAGTTTTGGCGAAATTCGTAAGCAAGTTAATGATAGTGGTGTGAGTATTGCTTTTACTATACCTGAAAATGTTAAAAAACTAGAGCCATTAGGCATGCCTATTATTGTTGTGCCAGAAAATGAAAAGGATTTGAAGCATGAATCTTTCTCATGTTTTTTTAACCTGATTTATGGTAACTTCGATTTGTCTCATAAGCCGGTTATTAAACAAGAAGACACTGCTGCTATATTGTACTCTTCTGGTACTACAGGTGCGAGCAAAGGAGTCGTTTTAACTCATAGAAATTTTATTGCTATGGTTGAGCTTTATATGTGGTTTCAAGCTTCTCAGTATGAATACTCTAGTTCCAAAAAGGTGTATCTAGCTGTTTTGCCGATGTTCCATTTATATGGTTTATCGCATTTTGCTTTGGGATTATTGTCGTTGGGCTCAACAATTGTAGTAATGAGGAAATTTGACATTGATGAGGCTATTACGGCGATTGGTAAATATAATGTTACACACTTTAATGTTGTTCCGCCGATAGTGTCGGCATTGACAACGAAGGCAAAGGGTGTTAAGGGAAATAAGTTGCAGAGTTTAAAACAGGTCATTTCCACTGCAGCACCTTTGAGTTTAGGAACTATCAATGATTTTGTTCAAGCTTTTCCTAATGTTGATATTATACAGAGTTATGGAATGACTGAGTCGGGCGGAATAGTAGCACAAGGCTTCAATACTGAAAAGTTTCACAACTATTCTTCACTAGGGTTGTTAGGTCCAAACATGGAGGCAAAAGTAGTAGACTGCAATAGTGGCGCATTTTTGCCTCCAGGCAGCAGTGGTGAGATTTGGGTGAGAGGACCTTCAATTATGAAAGGATACTTGAATAATGAGGAAGCTACAATGTCAACAATTGATAAAGATGGTTGGCTACATACTGGAGATATTGTATATTTTGATCAGGATGGATACTTATATTTGTGTGACCGCTTGAAAGACATGATCAAATACAAGGGTTTTCAGATTGCTCCTGGTGATTTAGAAGCTGTGTTAATTTTGCATCCTGAAATAGTTGATGTCGCCGTTACAGGTGCCAAGGATGAAGAAGCTGGGGAGATTCCAGTGGCATTTGTGGTTAAGAAGGCTGGAAGTTTACTTTCTCCAAAGGACGTTATCGATTACGTTGCGAAACAGGTTGCTCCACACAAGAAGGTTCGGAAAGTTGTCTTCACCGACAAGATACCAAGATCTACGATGGGCAAGAACCTCCGAAGGCAACTCAAAAATTACTTGACTTCTAAACTCTAA 1674 0.3805 MAANLNFKMPQNTITHPHWYSSKTGIYNSIHSPRIRNLPTDPFLDVVSFIFSHPHDGVLALIDHSTGSSISYSKLLPLVKSMASGLQKMGVSKGDVVLLLLPNSIYYPIVLLGVMYLGAIVTTLNPLSSFGEIRKQVNDSGVSIAFTIPENVKKLEPLGMPIIVVPENEKDLKHESFSCFFNLIYGNFDLSHKPVIKQEDTAAILYSSGTTGASKGVVLTHRNFIAMVELYMWFQASQYEYSSSKKVYLAVLPMFHLYGLSHFALGLLSLGSTIVVMRKFDIDEAITAIGKYNVTHFNVVPPIVSALTTKAKGVKGNKLQSLKQVISTAAPLSLGTINDFVQAFPNVDIIQSYGMTESGGIVAQGFNTEKFHNYSSLGLLGPNMEAKVVDCNSGAFLPPGSSGEIWVRGPSIMKGYLNNEEATMSTIDKDGWLHTGDIVYFDQDGYLYLCDRLKDMIKYKGFQIAPGDLEAVLILHPEIVDVAVTGAKDEEAGEIPVAFVVKKAGSLLSPKDVIDYVAKQVAPHKKVRKVVFTDKIPRSTMGKNLRRQLKNYLTSKL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01668 557 FunFam Long-chain-fatty-acid--CoA ligase FadD 35 454 - -
Trre10g01668 557 FunFam 4-coumarate--CoA ligase 2 455 556 - -
Trre10g01668 557 CDD 4CL 38 549 - -
Trre10g01668 557 Pfam AMP-binding enzyme 58 459 IPR000873 -
Trre10g01668 557 ProSitePatterns Putative AMP-binding domain signature. 204 215 IPR020845 -
Trre10g01668 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 551 - -
Trre10g01668 557 Pfam AMP-binding enzyme C-terminal domain 469 543 IPR025110 -
Trre10g01668 557 Gene3D - 40 454 IPR042099 -
Trre10g01668 557 SUPERFAMILY Acetyl-CoA synthetase-like 55 554 - -
Trre10g01668 557 Gene3D - 455 555 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01668 Trre-Chr10 14753988 14756780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01668 10 557 Monolignol Biosynthesis Gene Families AT4G19010 57.505 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01668 K01904 - gmx:100804808 804.283