Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01665 ATGATGGAAAGTGGTGGGAGAGAAGGGTTTGATGGAGTGATGATGACTATGACAAGAGACCCGAAGCCGAGGTTAAGGTGGACAGCCGATCTTCACGACCGGTTTGTCGACGCTGTCACAAAGCTTGGTGGCCCAGATAAGGCAACTCCTAAGTCTGTTCTAAGGTTAATGGGATTAAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAACATGCTCAAAAACAAAATGAAGAACAGTACAAAGAGAATAATAGATGTTCGTATGTAAATTTCAGTAACCATTCTACAGGGACCAATACCAGTTATGGATGTGACAATGAAGGGGGAGAAATCCCAATAGGAGAAGCACTAAGGCAACAAATTGAAGTTCAAAAAAGAATAGAAGAGCAACTTGAGGTACAAAAGAAATTGCAAATGAGAATAGAGTCTCAAGGGAAGTATTTACAAACAGTGTTAGAGAAAGCACAAATGAGTCTTTCACAAGATGAACATGGCAATCTTGAAGCATCAAAAGCTCAATTAGCTGAATTCAATTCAGCTTTATCAAATTTCATGGAAAATATGAACAAAGATAGTAAAGAAAACATTGTAGACATAAATGGATTTTATAATAAGAATTGTAGCTCAGCTTTCAATTATCAAGAATTACTAGGAACCGAAGAAAATAAGGATCTAAAGCCTCAAGTTGAAGGGGGGTCAGTACAATTAGACTTAAACATCAAAGGTGGCAATGAGCTTTTATCTACAAATGAGGCTGAAATGGATTCAAAGATGGTTTCATATAGGGTATACCACTTTTGA 825 0.3697 MMESGGREGFDGVMMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQHAQKQNEEQYKENNRCSYVNFSNHSTGTNTSYGCDNEGGEIPIGEALRQQIEVQKRIEEQLEVQKKLQMRIESQGKYLQTVLEKAQMSLSQDEHGNLEASKAQLAEFNSALSNFMENMNKDSKENIVDINGFYNKNCSSAFNYQELLGTEENKDLKPQVEGGSVQLDLNIKGGNELLSTNEAEMDSKMVSYRVYHF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01665 274 Gene3D - 21 79 - -
Trre10g01665 274 Pfam MYB-CC type transfactor, LHEQLE motif 120 165 IPR025756 -
Trre10g01665 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 229 IPR044848 GO:0003700
Trre10g01665 274 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 77 IPR006447 GO:0003677
Trre10g01665 274 FunFam Myb family transcription factor 21 79 - -
Trre10g01665 274 Coils Coil 175 195 - -
Trre10g01665 274 Pfam Myb-like DNA-binding domain 25 75 IPR001005 -
Trre10g01665 274 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Trre10g01665 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 79 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01665 Trre-Chr10 14677144 14680168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01665 15 191 G2-like Transcription Factor Family AT3G24120 51.366 1.85e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre10g01665 DUF3617 9.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01665 - - mtr:11409568 465.307