Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01654 ATGTGGTCACTACCGAATCATCCACCGTTTACAGTATCCCAATGGCAAGAGCTAGAACATCAAGCTCTCATCTTCAAGTATCTCAAAGCTGGTTTATCTGTTCCTCCAGACCTTCTTTTACCTATTCGGAAAAGTCTTCAATTGATGTCTCACCCATCTCTGGGTTATTATGGGAAAAAAATTGACCCAGAACCAGGTAGGTGTAGAAGAACAGATGGAAAAAAATGGAGATGTGCTAGGGATGCTCATCCTGATTCTAAGTACTGTGACCGTCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTTCTTCTTCTTCTTCTCAATCTTCTTCTTCAGTTTCAGTTTCTAGTACTTCACAACAACTTGGTTCTTCTATTGGAACTGTTACTGCTACTGTTTCTGCTTCTGCTACTGTTACTGCTACTTCAACCTTCCATTCTCTTCCTTTGCATACAAATGGTACTCGTGAAGGTTTAGGTTTCACTCTTGGGAACACCATACCCCACATGGACCCTATGCTTCTTCCTCTTCAAGATTCTAAGAAATCTTATAGGTTTGGACTGAACACCGAAGCAGAAGAGCACAACCTCTTACAGAAAGATTTCGGAACTGTGAAGTATCAAGGCTACGACTTCACTTCAGATGACACTTGGTATAATAACATGTCTCAGATTCCATCAAACAATGTTTCAGAATCAAGGACCGGTTCTACCATGGTTAACAACGGCAACTACTTCCAACAGCAGCGAACAACACGAGAACCTGAACAGCTGTTTAACCTCGACGCTGCAAGGTCCAAGGAAATCGTCTTTAACAACCAGTTAGGTAATTTGAAACAAGAATATCAATCTTCACAATCTCTCTTCAATGACTGGCAATGGAAGAAAGATTTAGCCTCCTCTGCAATGGAGTATAGACCAAGCAAGGATTTTAACACTAATCCAGATATCAATGCAGATTCAAATCCTACTTTATGA 990 0.4091 MWSLPNHPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQLMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCARDAHPDSKYCDRHMIRRRYRSRKPVESSSSSSQSSSSVSVSSTSQQLGSSIGTVTATVSASATVTATSTFHSLPLHTNGTREGLGFTLGNTIPHMDPMLLPLQDSKKSYRFGLNTEAEEHNLLQKDFGTVKYQGYDFTSDDTWYNNMSQIPSNNVSESRTGSTMVNNGNYFQQQRTTREPEQLFNLDAARSKEIVFNNQLGNLKQEYQSSQSLFNDWQWKKDLASSAMEYRPSKDFNTNPDINADSNPTL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01654 329 ProSiteProfiles WRC domain profile. 62 106 IPR014977 -
Trre10g01654 329 MobiDBLite consensus disorder prediction 99 120 - -
Trre10g01654 329 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre10g01654 329 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre10g01654 329 Pfam WRC 63 105 IPR014977 -
Trre10g01654 329 MobiDBLite consensus disorder prediction 310 329 - -
Trre10g01654 329 MobiDBLite consensus disorder prediction 104 120 - -
Trre10g01654 329 PANTHER GROWTH-REGULATING FACTOR 5 9 299 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre10g01654 329 Pfam QLQ 9 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01654 Trre-Chr10 14523014 14525635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01654 8 105 GRF Transcription Factor Family AT3G13960 58.182 2.96e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre10g01654 WRC 3.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01654 - - gmx:100809947 422.55