Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01653 ATGAGCGTTCAACCACCGCCGCAGCTGATGTGGTCACTACCGAATCATCCACCGTTTACAGTATCCCAATGGCAAGAGCTAGAACATCAAGCTCTCATCTTCAAGTATCTCAAAGCTGGTTTATCTGTTCCTCCAGACCTTCTTTTACCTATTCGGAAAAGTCTTCAATTGATGTCTCACCCATCTCTGGGTTATTATGGGAAAAAAATTGACCCAGAACCAGGTAGGTGTAGAAGAACAGATGGAAAAAAATGGAGATGTGCTAGGGATGCTCATCCTGATTCTAAGTACTGTGACCGTCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTTCTTCTTCTTCTTCTCAATCTTCTTCTTCAGTTTCAGTTTCTAGTACTTCACAACAACTTGGTTCTTCTATTGGAACTGTTACTGCTACTGTTTCTGCTTCTGCTACTGTTACTGCTACTTCAACCTTCCATTCTCTTCCTTTGCATACAAATGGTACTCGTGAAGGTTTAGGTTTCACTCTTGGGAACACCATACCCCACATGGACCCTATGCTTCTTCCTCTTCAAGATTCTAAGAAATCTTATAGGTTTGGACTGAACACCGAAGCAGAAGAGCACAACCTCTTACAGAAAGATTTCGGAACTGTGAAGTATCAAGGCTACGACTTCACTTCAGATGACACTTGGTATAATAACATGTCTCAGATTCCATCAAACAATGTTTCAGAATCAAGGACCGGTTCTACCATGGTTAACAACGGCAACTACTTCCAACAGCAGCGAACAACACGAGAACCTGAACAGCTGTTTAACCTCGACGCTGCAAGGTCCAAGGAAATCGTCTTTAACAACCAGTTAGGTAATTTGAAACAAGAATATCAATCTTCACAATCTCTCTTCAATGACTGGCAATGGAAGAAAGATTTAGCCTCCTCTGCAATGGAGTATAGACCAAGCAAGGATTTTAACACTAATCCAGATATCAATGCAGATTCAAATCCTACTTTATGA 1017 0.4149 MSVQPPPQLMWSLPNHPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQLMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCARDAHPDSKYCDRHMIRRRYRSRKPVESSSSSSQSSSSVSVSSTSQQLGSSIGTVTATVSASATVTATSTFHSLPLHTNGTREGLGFTLGNTIPHMDPMLLPLQDSKKSYRFGLNTEAEEHNLLQKDFGTVKYQGYDFTSDDTWYNNMSQIPSNNVSESRTGSTMVNNGNYFQQQRTTREPEQLFNLDAARSKEIVFNNQLGNLKQEYQSSQSLFNDWQWKKDLASSAMEYRPSKDFNTNPDINADSNPTL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01653 338 MobiDBLite consensus disorder prediction 319 338 - -
Trre10g01653 338 PANTHER GROWTH-REGULATING FACTOR 5 17 308 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre10g01653 338 ProSiteProfiles QLQ domain profile. 18 53 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre10g01653 338 Pfam WRC 72 114 IPR014977 -
Trre10g01653 338 MobiDBLite consensus disorder prediction 108 129 - -
Trre10g01653 338 ProSiteProfiles WRC domain profile. 71 115 IPR014977 -
Trre10g01653 338 Pfam QLQ 18 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre10g01653 338 SMART QLQ_2 17 53 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre10g01653 338 MobiDBLite consensus disorder prediction 113 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01653 Trre-Chr10 14523014 14525662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01653 17 114 GRF Transcription Factor Family AT3G13960 58.182 4.97e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre10g01653 WRC 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01653 - - gmx:100809947 426.787