Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01633 ATGGCTGTGAATCTGACACCAGGTGCGATTAAGACGATGTGTTTCACTTCAGAGGAATTGCAACCGGTGTTACAAGTTATCGATTTGAAGCTTGTTCAAGCGCAGCAGAATAGCTCTACTGAAAGGTACCGAGTAGTTCTCTCTGATGGTTCGTTTTATCAACAAGGAATGCTCGCTACTCAGAAGAATCAATTGGTTCATGAAAACAAGTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCAGTACGTTTGTAACGATGTTCAGAATCGCAAGATTATTATTATTGTTGATCTCGAGGTTATTCTGGACAAATGTGACTTGATTGGGAATCCTGTTTCGGTAAATGTTTCGGTAAAAGATTTACCTGCACAATCTGCTGTGAGTCAAGCAGGAAATGTTCAACCAGCTGCTGGTCAATTAGGAAACAATGCTGGAAATTCACAGTATTCAAACAGTAATTCCCATGCAGGTGGCAATAATGTTAGACCAAATGTGGCTGCACCATCTATAGATCGTTCGAACGTGAATCCTTCTGCCAGCAGTGTTTATTCTAACACTTCCGAACCTGCAAGATACGGTGCATCTAATGCTCCTCCATCTTATGCTAAACCTGAGCCTGGAGTCAGTTTGAATAGATCAGCACCAGTCAATGGGTCTTATGGTGAACAGAATACAAGTTTCAGCAATCCACAATACCAGGCTTCAAAACCGGTGCAAAATTCTTACCCTCGCCCTCAGCAGCCTATGAATCGACAGCCATCTCCAATGTACACCAACAGAGGGCCTACAGGAAGAAATGATGCTCCTCCAAGGATACTTCCAATATCTGCATTGAATCCATATCAGAATATTTGGACAATTAAAGCCAGAGTAACGTCTAAAGGAGAACTTAGGCTTTATAGCAATGCCCGAGGTGATGGAAAAGTATTTTCTTTTGATCTTTTGGATTCTTATGGTGGAGAAATAAAGGCGACTTGCTTTAATGCTGTGGCGGATCAGTTCTATAATGTAATCGAAGTTGGTAAAGTCTATCTTGTTTCCAGGGGAAGTGTGAAGCCAGCTCAGAAGAATTTTAATCACCTTTCTAATGATCAAGAGATAACCCTTGATATGACATCAGTTATACAGCCATGCCTTGAAGATGATAGCTCAATTCCAATGCAGAAATATAATTTCCGTTCCATTGGTGACATTGAAAGTATGGAAAACAACAGCATTGTGGACGTGATTGCTGTGGTTACTTCCATCAGTCCCACAGCTTCAATCATTAGAAAGAATGGCTCTGAAACACAGAAGCGATCTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACTTTATGGGGAAACTTTTGCAATAGCGAAGGACAAAGGCTGCAAAATATTTGTGACTCTGGGCAATTTCCAATTTTGTCTGTAAAATCTGCCAGAGTAAATGATTTCAATGGGAAGTCTGTTGGGACACTAACCATCAGCCAATTAATTGTAGAACCTGATTTTCCAGAGGCTTTTAAACTGAAAGAATGGTTTGATAGGGAAGGGAGGAATGTGCCAAGTCAATCTATTTCCAGAGAATCCAATTTTGCTAAAAGTGAAGTGCGGAAGACTGTACATCAAATTAAGGATGAAAATTTAGGGACTAAAGAGAAGCCTGACTGGATATCTATCTGTGCAAATGTTTCATACATTAAAAGTGACAATTTTTGCTACACAGCTTGTCCTATCATGATAGGAGATAGGCAATGTAACAAAAAGGTTACCAACGATGGAGATGGGAAATGGCGCTGTGACAGATGTGATCAGTCTGTTGATGCTTGTGATTATAGGTACTTACTGCAAATGCAGATACAGGATCACACTGCTTTAACATGGGCTACTGCTTTCCAGGAGGGTGGTGAGGAGATCATTGGTATGCCTGCAAAGGATTTGTATTTTGTGAGATATGAAGAATCAGATGAAGTAAAATTTGCAGAAATCATCTGCAAGGTTCTCTTCAACAGATATGTGTTCAAGTTAAAAGTAAAGGAGGAAACATTTAATGACGAATCACGTGTTAAGTCAACAGTAGTAAAAGCGGAAAAGGTAAACTTTGCATCTGATTCTAGATCTCTTCTGGATTTGATTGATAAACTTATGTCTGAGAAAGCAGAAGGTACAACTATTAACTCTGTGATCAATAACACTGGACTGGGGGGCCTTGAAACTGGACAAGTTATGCCACCCGTATATAACCCTATAAAGAGCAACACTAATACGGGTAGAGATTATGGGACCCCAGCAAACCAAGTGGCTCAGTATGGAAACCAATATAACAGTTCTTTTGCTTCGTCAGGGGCTCCTGGTTCGTACATGTCATGTAGCACCTGTGGAGGCACTGGGCATAGCTCTGCACAATGCCTAAATATTAGAAACCAATCTGGACAGTCTGCTGGCGGAGGGGCCTTTGCTAACAGGGTATCTGCTGGATCAGGTGGTGGTTCTGGTGATTGCTATAAATGCCAACAACCTGGTCATTGGGCGAGAGATTGTCCTGGTATCAGTGCAGCACCTTCGGATCAGTATTTGCAGCGCCCAACTGCTGGATCAGGTGGTGGTTCCGGTGATTGCTATAAATGCCAACAACCTGGTCATTGGGCAAGAGATTGTCCTGGTAATGGTGCAGCACCTCAATCTTATGGAAACAGTAATGCAGGGCAAGGAAGATATGGTAGTGCTCAAAATCAGCAGTATGGAGGACGATATTGA 2751 0.4173 MAVNLTPGAIKTMCFTSEELQPVLQVIDLKLVQAQQNSSTERYRVVLSDGSFYQQGMLATQKNQLVHENKLQKGSVVRLTQYVCNDVQNRKIIIIVDLEVILDKCDLIGNPVSVNVSVKDLPAQSAVSQAGNVQPAAGQLGNNAGNSQYSNSNSHAGGNNVRPNVAAPSIDRSNVNPSASSVYSNTSEPARYGASNAPPSYAKPEPGVSLNRSAPVNGSYGEQNTSFSNPQYQASKPVQNSYPRPQQPMNRQPSPMYTNRGPTGRNDAPPRILPISALNPYQNIWTIKARVTSKGELRLYSNARGDGKVFSFDLLDSYGGEIKATCFNAVADQFYNVIEVGKVYLVSRGSVKPAQKNFNHLSNDQEITLDMTSVIQPCLEDDSSIPMQKYNFRSIGDIESMENNSIVDVIAVVTSISPTASIIRKNGSETQKRSLQLKDMSGRSVELTLWGNFCNSEGQRLQNICDSGQFPILSVKSARVNDFNGKSVGTLTISQLIVEPDFPEAFKLKEWFDREGRNVPSQSISRESNFAKSEVRKTVHQIKDENLGTKEKPDWISICANVSYIKSDNFCYTACPIMIGDRQCNKKVTNDGDGKWRCDRCDQSVDACDYRYLLQMQIQDHTALTWATAFQEGGEEIIGMPAKDLYFVRYEESDEVKFAEIICKVLFNRYVFKLKVKEETFNDESRVKSTVVKAEKVNFASDSRSLLDLIDKLMSEKAEGTTINSVINNTGLGGLETGQVMPPVYNPIKSNTNTGRDYGTPANQVAQYGNQYNSSFASSGAPGSYMSCSTCGGTGHSSAQCLNIRNQSGQSAGGGAFANRVSAGSGGGSGDCYKCQQPGHWARDCPGISAAPSDQYLQRPTAGSGGGSGDCYKCQQPGHWARDCPGNGAAPQSYGNSNAGQGRYGSAQNQQYGGRY 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01633 916 Gene3D - 523 714 IPR012340 -
Trre10g01633 916 CDD RPA1_DBD_C 539 712 IPR047192 -
Trre10g01633 916 ProSiteProfiles Zinc finger CCHC-type profile. 871 885 IPR001878 GO:0003676|GO:0008270
Trre10g01633 916 FunFam Replication protein A subunit 384 522 - -
Trre10g01633 916 SMART c2hcfinal6 870 886 IPR001878 GO:0003676|GO:0008270
Trre10g01633 916 SMART c2hcfinal6 787 803 IPR001878 GO:0003676|GO:0008270
Trre10g01633 916 SMART c2hcfinal6 831 847 IPR001878 GO:0003676|GO:0008270
Trre10g01633 916 Pfam OB-fold nucleic acid binding domain 285 369 IPR004365 GO:0003676
Trre10g01633 916 MobiDBLite consensus disorder prediction 130 269 - -
Trre10g01633 916 FunFam Replication protein A subunit 523 713 - -
Trre10g01633 916 CDD RPA1_DBD_A 274 377 - -
Trre10g01633 916 Gene3D - 863 894 - -
Trre10g01633 916 MobiDBLite consensus disorder prediction 892 916 - -
Trre10g01633 916 SUPERFAMILY Retrovirus zinc finger-like domains 824 887 IPR036875 GO:0003676|GO:0008270
Trre10g01633 916 FunFam Replication protein A subunit 4 115 - -
Trre10g01633 916 Gene3D - 3 116 IPR012340 -
Trre10g01633 916 SUPERFAMILY Nucleic acid-binding proteins 390 519 IPR012340 -
Trre10g01633 916 PANTHER REPLICATION FACTOR A 1, RFA1 285 686 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre10g01633 916 MobiDBLite consensus disorder prediction 130 193 - -
Trre10g01633 916 Pfam Zinc knuckle 832 846 IPR001878 GO:0003676|GO:0008270
Trre10g01633 916 Pfam Zinc knuckle 871 885 IPR001878 GO:0003676|GO:0008270
Trre10g01633 916 CDD RPA1_DBD_B 406 513 - -
Trre10g01633 916 Gene3D - 785 855 - -
Trre10g01633 916 Gene3D - 271 380 IPR012340 -
Trre10g01633 916 Pfam Replication protein A OB domain 395 498 IPR031657 -
Trre10g01633 916 SUPERFAMILY Nucleic acid-binding proteins 271 385 IPR012340 -
Trre10g01633 916 Gene3D - 384 522 IPR012340 -
Trre10g01633 916 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Trre10g01633 916 CDD RPA1N 8 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Trre10g01633 916 Pfam Replication factor-A C terminal domain 555 706 IPR013955 -
Trre10g01633 916 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Trre10g01633 916 ProSiteProfiles Zinc finger CCHC-type profile. 832 846 IPR001878 GO:0003676|GO:0008270
Trre10g01633 916 FunFam Replication protein A subunit 271 381 - -
Trre10g01633 916 SUPERFAMILY Nucleic acid-binding proteins 536 714 IPR012340 -
Trre10g01633 916 MobiDBLite consensus disorder prediction 212 261 - -
Trre10g01633 916 NCBIfam replication factor-a protein 1 (rpa1) 221 712 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01633 Trre-Chr10 14330137 14333400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01633 1 815 Core DNA Replication Machinery Family AT5G45400 51.157 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01633 K07466 - gmx:100778597 1234.17