Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01627 ATGATTGCATCAGAAATTGAGGCTAAGCTTGATGAAGGAAATATTCAAGAGGCAGAATCTTCATTGCGAGAAGGGTTGTCACTCAATTTTGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTCCGTGTCTTTGATGGGATCGATCTCCATGCTGCCATACAGCGGTTGCAACCCTCCTTTTCTGAAAAATCACCTGCCAAAAAAGGTCTTACTCGCACAGAATCACCTTCTTCAGTCTCTCATCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCAACAAAAACTGGGGAAATTTGCTGATGCTGCTAATGACTGTAAGCGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTAATTTTCAAGTGGACAATAAATTGCAAGAGATAATCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGGTGGTTGCTATGATGAGGCAATCTCGGCTTATAGGCGTGCTATTCTTAGTCAATGGAACCTCGACAATGATTGTTGTTCAAGAATTCAGAAATCGTTTGTTGTTTTTCTTCTGTACAGTGGTGTGGAGGCAAGTCCGCCTAGTTTAGCAGTTCAGATTGAGGGCTCTTATGTTCCTAAAAATAATCTCGAAGAGGCGATTCTGCTTCTAATGATTCTTATACGAAAGTTTTGTGCTGGTAAGATAAAATGGGATCCTTCAATTATGGAACACCTAACTTTTGCACTTTCTGTATGTAGCCAAACTTCTGTTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAGTATACCATCGTACCGATCGTTGGAATTCTTTAGCTTTATGTCATTGTGCAGCCGGACAAAATGTCAGTGCTTTGAATCTGCTAAGGAAGTGCTTGCACAAACATGAACGACCAGACGACCTTACATTGTTGTTATTAGCTGCTAAGATCTGCAGTGAGGTTCCTTATCTTGCCAGCGAGGGAGTCGTCCATGCACAGAGAGCAATCAGTAATGCACATGGTCCAAATGAGCATTTAAAAGGCGTTGCTCTACGGATGTTGGGACTTTGTCTCGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTTGAGAGGTCTCACCTTCAATCCAAAGCTTTGGAGTCACTGGAGGAGGCAACTAGATTGGAGAAAAACAATTCTGATCTGATTTTTGAGTTGGCGGTTCAATATGCCGAGCACCGAAATTTGACAGCTGCTTTGCGTTCCGCACGGCATTTCTTCAATGAAACTGGCGGCTCTATCGTGAAAGCTTGGATATTGCTTGCTCTGATTTTGTCGGCACAACAAAGATTTGCGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGAGCAGATTGTGAGATGGGAGCAAGGGCCTCTGCTTATGCTTAAAGCAAAGCTGAAGATCTCCCAATCAAAAGCCATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCTTTTGGGTCTTTCCGAGTTGAAGATGATAAAGTTAATGAATTCGATATTTGGCATGGTCTTGCAAATTTATATGCCAGTCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGCAGTACTCTGCAGCTATTTTGCGCACCGAAAGTATTTTGTTTGAAGGACGCGGACAAAACCAAGAAGCTCTCAATACTACTATTAATGCTATACTACTTGAACCAAACCATGTTCCAAGCAAAATCTTAATGAGTGCTTTGATTCAGAAAATGGGTTCAAAGGCTTTGGCTGCTGCAAGAAGCATGCTGTCTGATGCGCTTAGAATAGAACCTACCAACCGGATGGCTTGGTATTACTTGGGATTGGTTCACAAGAATGATGGCCGAATGGCTGATGCTGCGGACTGCTTCCAGGCAGCTTCCATGCTGGAAGAATTTGATCCCATCGAAAGTTTCAGCACTGTACTTTGA 2013 0.4287 MIASEIEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSPAKKGLTRTESPSSVSHHAASLVLEAIYLKAKSQQKLGKFADAANDCKRILDAVEKIFYQGIPNFQVDNKLQEIISHAVELLPELWKQGGCYDEAISAYRRAILSQWNLDNDCCSRIQKSFVVFLLYSGVEASPPSLAVQIEGSYVPKNNLEEAILLLMILIRKFCAGKIKWDPSIMEHLTFALSVCSQTSVLAKQFEDLMPGVYHRTDRWNSLALCHCAAGQNVSALNLLRKCLHKHERPDDLTLLLLAAKICSEVPYLASEGVVHAQRAISNAHGPNEHLKGVALRMLGLCLGKQAKVASSDFERSHLQSKALESLEEATRLEKNNSDLIFELAVQYAEHRNLTAALRSARHFFNETGGSIVKAWILLALILSAQQRFAEAEVVTDAALEQIVRWEQGPLLMLKAKLKISQSKAMDAIETYRYLLALVQAQKKSFGSFRVEDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKQYSAAILRTESILFEGRGQNQEALNTTINAILLEPNHVPSKILMSALIQKMGSKALAAARSMLSDALRIEPTNRMAWYYLGLVHKNDGRMADAADCFQAASMLEEFDPIESFSTVL 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01627 670 Pfam Tetratricopeptide repeat 611 654 - -
Trre10g01627 670 Gene3D Tetratricopeptide repeat domain 218 503 IPR011990 GO:0005515
Trre10g01627 670 SUPERFAMILY TPR-like 98 423 IPR011990 GO:0005515
Trre10g01627 670 Gene3D Tetratricopeptide repeat domain 5 181 IPR011990 GO:0005515
Trre10g01627 670 Gene3D Tetratricopeptide repeat domain 515 662 IPR011990 GO:0005515
Trre10g01627 670 SMART tpr_5 438 471 IPR019734 GO:0005515
Trre10g01627 670 SMART tpr_5 282 315 IPR019734 GO:0005515
Trre10g01627 670 SMART tpr_5 558 591 IPR019734 GO:0005515
Trre10g01627 670 SMART tpr_5 524 557 IPR019734 GO:0005515
Trre10g01627 670 SMART tpr_5 98 131 IPR019734 GO:0005515
Trre10g01627 670 SMART tpr_5 628 661 IPR019734 GO:0005515
Trre10g01627 670 SUPERFAMILY TPR-like 477 655 IPR011990 GO:0005515
Trre10g01627 670 PANTHER PROTEIN NPG1 4 667 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01627 Trre-Chr10 14292056 14295814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01627 1 670 Calmodulin-binding Proteins AT2G43040 69.867 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01627 K21843 - gmx:100814609 1115.52