Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01626 ATGGAGTCCAGTGAGCATGAGAGATTGTCGGTTAGAGAGGTTCATGCAAATGGAAGCCGTATGATTGCATCAGAAATTGAGGCTAAGCTTGATGAAGGAAATATTCAAGAGGCAGAATCTTCATTGCGAGAAGGGTTGTCACTCAATTTTGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTCCGTGTCTTTGATGGGATCGATCTCCATGCTGCCATACAGCGGTTGCAACCCTCCTTTTCTGAAAAATCACCTGCCAAAAAAGGTCTTACTCGCACAGAATCACCTTCTTCAGTCTCTCATCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCAACAAAAACTGGGGAAATTTGCTGATGCTGCTAATGACTGTAAGCGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTAATTTTCAAGTGGACAATAAATTGCAAGAGATAATCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGGTGGTTGCTATGATGAGGCAATCTCGGCTTATAGGCGTGCTATTCTTAGTCAATGGAACCTCGACAATGATTGTTGTTCAAGAATTCAGAAATCGTTTGTTGTTTTTCTTCTGTACAGTGGTGTGGAGGCAAGTCCGCCTAGTTTAGCAGTTCAGATTGAGGGCTCTTATGTTCCTAAAAATAATCTCGAAGAGGCGATTCTGCTTCTAATGATTCTTATACGAAAGTTTTGTGCTGGTAAGATAAAATGGGATCCTTCAATTATGGAACACCTAACTTTTGCACTTTCTGTATGTAGCCAAACTTCTGTTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAGTATACCATCGTACCGATCGTTGGAATTCTTTAGCTTTATGTCATTGTGCAGCCGGACAAAATGTCAGTGCTTTGAATCTGCTAAGGAAGTGCTTGCACAAACATGAACGACCAGACGACCTTACATTGTTGTTATTAGCTGCTAAGATCTGCAGTGAGGTTCCTTATCTTGCCAGCGAGGGAGTCGTCCATGCACAGAGAGCAATCAGTAATGCACATGGTCCAAATGAGCATTTAAAAGGCGTTGCTCTACGGATGTTGGGACTTTGTCTCGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTTGAGAGGTCTCACCTTCAATCCAAAGCTTTGGAGTCACTGGAGGAGGCAACTAGATTGGAGAAAAACAATTCTGATCTGATTTTTGAGTTGGCGGTTCAATATGCCGAGCACCGAAATTTGACAGCTGCTTTGCGTTCCGCACGGCATTTCTTCAATGAAACTGGCGGCTCTATCGTGAAAGCTTGGATATTGCTTGCTCTGATTTTGTCGGCACAACAAAGATTTGCGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGAGCAGATTGTGAGATGGGAGCAAGGGCCTCTGCTTATGCTTAAAGCAAAGCTGAAGATCTCCCAATCAAAAGCCATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCTTTTGGGTCTTTCCGAGTTAGTTCAAAGGTTGAAGATGATAAAGTTAATGAATTCGATATTTGGCATGGTCTTGCAAATTTATATGCCAGTCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGCAGTACTCTGCAGCTATTTTGCGCACCGAAAGTATTTTGTTTGAAGGACGCGGACAAAACCAAGAAGCTCTCAATACTACTATTAATGCTATACTACTTGAACCAAACCATGTTCCAAGCAAAATCTTAATGAGTGCTTTGATTCAGAAAATGGGTTCAAAGGCTTTGGCTGCTGCAAGAAGCATGCTGTCTGATGCGCTTAGAATAGAACCTACCAACCGGATGGCTTGGTATTACTTGGGATTGGTTCACAAGAATGATGGCCGAATGGCTGATGCTGCGGACTGCTTCCAGGCAGCTTCCATGCTGGAAGAATTTGATCCCATCGAAAGTTTCAGCACTGTACTTTGA 2085 0.4297 MESSEHERLSVREVHANGSRMIASEIEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSPAKKGLTRTESPSSVSHHAASLVLEAIYLKAKSQQKLGKFADAANDCKRILDAVEKIFYQGIPNFQVDNKLQEIISHAVELLPELWKQGGCYDEAISAYRRAILSQWNLDNDCCSRIQKSFVVFLLYSGVEASPPSLAVQIEGSYVPKNNLEEAILLLMILIRKFCAGKIKWDPSIMEHLTFALSVCSQTSVLAKQFEDLMPGVYHRTDRWNSLALCHCAAGQNVSALNLLRKCLHKHERPDDLTLLLLAAKICSEVPYLASEGVVHAQRAISNAHGPNEHLKGVALRMLGLCLGKQAKVASSDFERSHLQSKALESLEEATRLEKNNSDLIFELAVQYAEHRNLTAALRSARHFFNETGGSIVKAWILLALILSAQQRFAEAEVVTDAALEQIVRWEQGPLLMLKAKLKISQSKAMDAIETYRYLLALVQAQKKSFGSFRVSSKVEDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKQYSAAILRTESILFEGRGQNQEALNTTINAILLEPNHVPSKILMSALIQKMGSKALAAARSMLSDALRIEPTNRMAWYYLGLVHKNDGRMADAADCFQAASMLEEFDPIESFSTVL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01626 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Trre10g01626 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Trre10g01626 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Trre10g01626 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Trre10g01626 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Trre10g01626 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Trre10g01626 694 Gene3D Tetratricopeptide repeat domain 535 685 IPR011990 GO:0005515
Trre10g01626 694 Pfam Tetratricopeptide repeat 635 678 - -
Trre10g01626 694 Gene3D Tetratricopeptide repeat domain 19 203 IPR011990 GO:0005515
Trre10g01626 694 Gene3D Tetratricopeptide repeat domain 231 531 IPR011990 GO:0005515
Trre10g01626 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Trre10g01626 694 SUPERFAMILY TPR-like 53 448 IPR011990 GO:0005515
Trre10g01626 694 SUPERFAMILY TPR-like 497 679 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01626 Trre-Chr10 14292056 14295874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01626 11 694 Calmodulin-binding Proteins AT2G43040 69.723 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01626 K21843 - gmx:100814609 1152.5