Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01619 ATGGCACATGATTATGGTGATAATCCTTTTTCTGTTAAAGTTGCTGTCATACTTATGGCCATTGGTTCAGGAGTATTTTTTGTTTCAATATATCATATCCTAGCCATTTGGTTTTGCCACCAAGGAAGAACCACCACAAATCAAAACTCGCCACGGCACGGTGCCGCGAGCCTTGACGGAAGCCCATCCATATCAATAGCAGACCTAATACCAACACACAAGTACCACAAGAGAAATAAAGTTGACATGATTTCAGACGACGAAGGTGGCACATGTGCCGTGTGTTTGGAAGATTTTGAAGAGGGTGAAGAGTTGAGAACTATGCCGGAGTGCTTGCATTCTTTTCATGTACCGTGTATTGACATGTGGCTCAATTCGCACACGAGTTGTCCCATTTGTCGCGCTAGTGCCGCTCCTTCGCCAACGATGAATATTGAACATCAACACATGATAAATATGAGACATATGACTCCAATTGCTATCATGAATCATAAATTAATTGAAAGACTGAAATTGCACGGAATAGAAAACACGAGACAAAAAACTGGAAGTTATTGGGGTCAAATAATATTTACAAAAGTGTGGTATCTTGTAGGACCCTGA 603 0.4113 MAHDYGDNPFSVKVAVILMAIGSGVFFVSIYHILAIWFCHQGRTTTNQNSPRHGAASLDGSPSISIADLIPTHKYHKRNKVDMISDDEGGTCAVCLEDFEEGEELRTMPECLHSFHVPCIDMWLNSHTSCPICRASAAPSPTMNIEHQHMINMRHMTPIAIMNHKLIERLKLHGIENTRQKTGSYWGQIIFTKVWYLVGP 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01619 200 Pfam Ring finger domain 91 134 IPR001841 -
Trre10g01619 200 CDD RING-H2_EL5-like 92 134 - -
Trre10g01619 200 SUPERFAMILY RING/U-box 74 140 - -
Trre10g01619 200 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Trre10g01619 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 141 IPR013083 -
Trre10g01619 200 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 138 IPR044675 -
Trre10g01619 200 SMART ring_2 92 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01619 Trre-Chr10 14255406 14256486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01619 16 185 C3H Transcription Factor Family AT5G17600 29.670 8.92e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01619 - - tpra:123907580 260.381