Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01618 ATGGCACATGATGGTGATAATCCTTTTTCTGACAAAGTTGTTATCCTACTTATTGCCATGGGTTCAGCAGCATTTGTTGTCTCAATCTACCATGTCATAGCCATTTGGTTTTGCCATCAAAGAACCACCACAAACCAAAATTCACCGCGGCGTGGTGCTGCAAGTCTCGACGAGAACACATCCATATCAGTGGCGGACTTGATTCCAACACACAAGTACCACAAGAGAAGTAAAGTTGACGTGGTTTTAGATGACGAAGGTGGCACGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGCGAGGAGTTGAAAACTATGCCCGAGTGTTTGCATTCTTTTCATGTACCGTGTATTGACTTGTGGCTCAATTCGTATTCGAGTTGCCCCATTTGTCGCGCTAGTGCCGCCCCTTCCCCGGCAATGAATATTGAACATCAACACATGATTGATATGAGACACACGGCTCCAATTGCTATCATGTAA 483 0.4555 MAHDGDNPFSDKVVILLIAMGSAAFVVSIYHVIAIWFCHQRTTTNQNSPRRGAASLDENTSISVADLIPTHKYHKRSKVDVVLDDEGGTCAVCLGDFEEGEELKTMPECLHSFHVPCIDLWLNSYSSCPICRASAAPSPAMNIEHQHMIDMRHTAPIAIM 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01618 160 CDD RING-H2_EL5-like 90 132 - -
Trre10g01618 160 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 136 IPR044675 -
Trre10g01618 160 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Trre10g01618 160 SUPERFAMILY RING/U-box 80 137 - -
Trre10g01618 160 Pfam Ring finger domain 89 132 IPR001841 -
Trre10g01618 160 SMART ring_2 90 131 IPR001841 -
Trre10g01618 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01618 Trre-Chr10 14253667 14254149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01618 25 146 C3H Transcription Factor Family AT4G10150 34.615 1.23e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01618 - - tpra:123907580 270.781