Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01617 ATGGCAAATGATGATGGTGATCCTGCTTTTAATTACAACGTTATTATAGAACTTGTTTTTTTGGCTGGAGCTATATTTGTTATTAGGACATTCTACCGTTTCATAGCTGTTTATTTTGGTCGCCAAGATCGAACCGCTACGAACCAAAACCCACCACAACCAACGTGGTATGCCGCGTCACTGAGCCTCAACGAAAGAACATTGTCATCAGTTGTACACCAAATTCCAACACACAAGTACCACAAGACAAATAAAGTTGATGTGGTTTCGGATGATGATGGTGGCACGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGGGAGGAGTTGAGGACTATGCCCGAGTGCTTGCACTCTTTTCATGTACTGTGTATTGACATGTGGCTCCATTCGCATCTGAGTTGCCCTATTTGCCGTGCTAGTGCCGCCCCTTTGCCGGTGGTGAACCAACATCATTGCATCATAGATATGAGGAATATGGTTCCACTTGCAACCGTGCAAAGTGAAATACGTCCAAGCACAATAGATATTGCATAA 537 0.4432 MANDDGDPAFNYNVIIELVFLAGAIFVIRTFYRFIAVYFGRQDRTATNQNPPQPTWYAASLSLNERTLSSVVHQIPTHKYHKTNKVDVVSDDDGGTCAVCLGDFEEGEELRTMPECLHSFHVLCIDMWLHSHLSCPICRASAAPLPVVNQHHCIIDMRNMVPLATVQSEIRPSTIDIA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01617 178 SMART ring_2 97 138 IPR001841 -
Trre10g01617 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 142 IPR044675 -
Trre10g01617 178 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Trre10g01617 178 CDD RING-H2_EL5-like 97 139 - -
Trre10g01617 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 144 IPR013083 -
Trre10g01617 178 SUPERFAMILY RING/U-box 77 145 - -
Trre10g01617 178 Pfam Ring finger domain 96 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01617 Trre-Chr10 14245609 14246145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01617 2 139 C3H Transcription Factor Family AT1G20823 32.877 6.48e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01617 - - tpra:123904269 313.538