Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01616 ATGGCAAATGATGATGATGATCATCCTATTTATAACAACATAATTGTCCTACTTATTGTTGTGGCTTCAATTACATTTGTTGTTGGCTCATTGTACCGAATCTTAACCATTTGGTTTTGTAACCAGCAAAGCACCCCGACAGATCAAAACCTCCCGCAACCACCACCGCGGTTTGCCTCGACAACAAACCTCGGGGAAAACACATCCTCATCAATAGTACACCTAATTCCTACACACAAGTACCACAAGAGAAATAAAGCTGATGTTGTTTTAGATGATGATGGTGACACGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGCGAGGAGTTGAAGACTATGCCTGAGTGCTTGCACTCCTTTCATGTACCGTGTATCGACATATGGCTCCATTCGCATTCGAGTTGCCCTGTTTGTCGTGCCAGTGCCAGTGCCGCCCCTTCCCCGACAGTGAATGAACAACATCATAGGATAAATATGAGTAATAATATGGTTCCACTTGCTATCATGCAAGGCCAGCAAAGGGGATTATGGTGA 537 0.4451 MANDDDDHPIYNNIIVLLIVVASITFVVGSLYRILTIWFCNQQSTPTDQNLPQPPPRFASTTNLGENTSSSIVHLIPTHKYHKRNKADVVLDDDGDTCAVCLGDFEEGEELKTMPECLHSFHVPCIDIWLHSHSSCPVCRASASAAPSPTVNEQHHRINMSNNMVPLAIMQGQQRGLW 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01616 178 CDD RING-H2_EL5-like 98 140 - -
Trre10g01616 178 Pfam Ring finger domain 96 140 IPR001841 -
Trre10g01616 178 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Trre10g01616 178 SMART ring_2 98 139 IPR001841 -
Trre10g01616 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 145 IPR013083 -
Trre10g01616 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 147 IPR044675 -
Trre10g01616 178 SUPERFAMILY RING/U-box 92 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01616 Trre-Chr10 14242965 14243501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01616 16 152 C3H Transcription Factor Family AT5G17600 34.722 2.67e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01616 - - mtr:11405522 242.276