Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01597 ATGTCTCTTCTCAGCAGATTCTTCTACAAAAGACCCCCAGATGGTTTACTTGAATTTATCGATAGAGTTTACGTTTTCGATTCATGTTTCTCAACAGAAGCATTACCAGATGGAATGTATCAGCTATATCTTCACGAAATTGTGACTGAATTAAATGAAGAGTTTCCTGAATCTTCGTTTTTAGCTTTCAATTTTCGTGAGGGAGAGAAACGTAGTGATTTTGCTGAGATAATGTGTGATTATGATGTTATTGTTATGGATTATCCAAAACAATATGAGGGTTGTCCTCTTTTGCCACTTTCTCTTGTTCAGCATTTTCTTCGTGTTTGTGAGAGTTGGCTTTTACTTGGCAATCATCAAAATGTGATTTTGTTTCATTGTGAAAGAGGTGGTTGGCCACTTTTGGCCTTTTTATTAGCAAGCTTGTTGATTTTTAGAAGGGTTCATAGTGGTGAACGTAGGACACTTGATATGGTTCATAGAGAAGCACCTAAGGGTTTGTTGCAGTTGTTGTCACCTTTGAATCCGTTGCCTTCGCAGCTTCGTTATATTCAATATGTCGCGAGGAGGAATATTGCTCCTGAGTGGCCTCCACCTGAGAGGGCGTTGTCTTTGGATTGTGTTATTCTTAGGGGGATTCCCAGTTTTGATTCCTCTAATGGATGTAGGCCAATGTTTAGGATTTTCGGGAGGAATTTGCTTAGTAGAGGTGGACTTTCTACTCAGATGATTTATAATATGCACAAGAAGAAACATTTGAGGCATTATCGCCAGGTAGACTGTGATGTGATTAAGATTGATATTCAATGTTTAGTACAAGGAGATGTGGTTTTGGAGTGTGTCCATTTGGATTTGGATCCGGAAAGGGAAGTGATGATGTTTCGTGTGATGTTCAATACAGCATTTATTCGATCCAACATATTGATGCTGAACACTGAAAACTTGGATATTCTTTGGGATTCGAAGGAGCGGTATCCGAAAGGCTTTCGGGCTGAGGTTTTATTTGGGGAGGTTGAAAACATAAGTCCTCAGAGAGCTCCAACAGAGACAACCATTTTGAATGGCGAGGAGAAAGGTGGATTACCCATTGAAGCATTTTCAAAAGTTCAAGAACTTTTTAGTGGAGTGGATTGGGTTGACAGCGGTGATGCTGCAGCAGTGTGGCTGCTTAGACAGCTCAATGTCTTAAATGATGCCAAAGAGTTTTCGAGGTTGCAAGGTAAAGGAAGTTGGTTTTCGTCGCCAGCTGACTCTGAAGAAGAAAATAATGAATCAAGTGTTGCTGATAGTTCAGATGAGGCCAGTGATGTTACTCCCAATTCTTTTGCCGATCCTTCAAAATTATTGACATCTGACACCCTTGATTTGGATCATTTAGCTTTGGAAAACAATGGTGGAAATTGTGTAAATGCTGCTGGTCCACCTCCACCCCCTCCCCCTTTCATTGCCAGCAATGCCAGCAGTGATTCCACATTGCCTCCACCTCCTCCTTCAGGACTTGTACATACAAGTTCAGTCCCATTACCTCCACCCCCACCACCCCCACCTCCCCCTCCTCCTGGTCCTATACAAACAGGTTCAATCCCACCACCACCGCCTCTTCCAGGTACTGTACAAATAGGTTCATCCCTGCCCCCCCCACCTCCACCTCTTCCAGGTGTTACTCGGTCAGCCCCACCACCTCCACCTCCACCTCCTCCAGGTCTTACACAAATAGGTTTAACCCCGCCGCCGCCACCACCTCCTCCTCCAGTTCCGGTACGAACAGGTTCAGCCCCGCCACCTCCACCTCCTCCTCCAGGTTCAGTACAAACAGGTTCTACCCCACCACCCCCACCCCCACCACCTCCAGGATCTACACGAACAGGATCAGTTCCACCACCTCCTCCGCCCCCTCCGGGTTCTACACAAACAGGATCATCCCCACCACCTCCTCCTCCACCACCGCCAGGCCCTGCCCGTATAGGATCAGGCCCACCACCTCCACCACCTCCTCCAGGTCCTGCACGAACAGGTTCAGCTCCACCACCTCCTCCAGGTGCACGAACAGGTTCAGCTCCACCTCCGCCACCACCACCACCAGGTTGTGCCCCACCACCTCCACCTCCTCCAGGTGTACGGACGGGTTCAGCTCCAACAGCACCAAAGCCTCCAAATGCTCCTCCTCCACCACCACCTGGTCGTGGTTCAGTGCCGGCACCTCCACTTACTGCAGGCAAGGCCTCTAGTGTGCCTCCACCACCAGGCAAAGCTTCTTCAGCAACAACAAATGTGGGAAGAGGTCGTGGTACTGGTGCTATTGCTGCTAAGAAAACTTTGTTAAAGCCCCTACATTGGGTGAAAGTCTCACGAGCAGTACAAGGGAGTCTATGGGCTGATTCACAGAAACAAGGCAGTGGTTCAAGGGCCCCTGAAATAGACATATCGGAACTTGAGACCCTGTTTTCAGCAGCATCTATTTCTGATGGAAATAGTACTAAAGGTGGTGTTCGGCGTGGTTCTAATATTAACAAACCTGAGAAAGTACAATTGGTTGACTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGACATGCTTAGTGCAGTTTTGGCATTGGATTCTGGTGTTCTGGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCCACAAAGGAAGAGATGGAGATACTGAAGAACTATGCTGGGAACAAGGATATGCTCGGGAAGTGTGAACAGTTTTTTATGGAGCTGATGAAAGTTCCACGAGTAGAAGCCAAGTTAAGAGTGTTTGCTTTTAAAATCACCTTTTCTGCTCAGGTGAGCGATTTAAGGATAAACTTGAATACAATCAACGATGCAACCAGAGAGGTCAAAGAATCGGTAAAATTGCGTCAAATAATGCAGACTATTCTTACGTTGGGCAACGCTTTGAATCAGGGAACAGCACGAGGATCAGCAGTAGGATTCAAATTGGACAGCCTTCTCAAATTATCTGATACCCGTGCAAGAAATAATAAAATGACTTTAATGCACTATTTGTGTAAGCTTCTTGCTGAGAAAATGCCAGAATTGATAGATTTTGACAAGGATCTTGTGCATTTAGAAGCTGCTTCTAAGATCCAACTAAAAGCATTAGCTGAAGAAATGCAAGCTGTGCATAAAGGTTTGGAAAAAGTTGAGCAAGAACTAACTGCTTCTGAAAATGATGGTGCTATATCTTCAGGATTTCGCAAGGTGTTGAAGAATTTTCTTGATTTTGCTGAAGCCGATGTGAGGTCACTTATATCATTGTATGCCGATGTGGGAAGAAATGCCGATTCTTTGTCCCAATACTTTGGGGAGGATCCATCTAGGTGCCCCTTTGAACAAGTGACACAAATACTTGTTGTCTTTGTAAAGACCTTCAAGAAGTCAAGGGAGGAGAACGAAAGGTTAGCAGATGCCGAGAAAAAGAAATTAGAGAAAGAAGCCATGAAGGACAAGGCAGCAAATAACATGCATTCTAGAAAAGATGTTGTTCGATAG 3534 0.4505 MSLLSRFFYKRPPDGLLEFIDRVYVFDSCFSTEALPDGMYQLYLHEIVTELNEEFPESSFLAFNFREGEKRSDFAEIMCDYDVIVMDYPKQYEGCPLLPLSLVQHFLRVCESWLLLGNHQNVILFHCERGGWPLLAFLLASLLIFRRVHSGERRTLDMVHREAPKGLLQLLSPLNPLPSQLRYIQYVARRNIAPEWPPPERALSLDCVILRGIPSFDSSNGCRPMFRIFGRNLLSRGGLSTQMIYNMHKKKHLRHYRQVDCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNTENLDILWDSKERYPKGFRAEVLFGEVENISPQRAPTETTILNGEEKGGLPIEAFSKVQELFSGVDWVDSGDAAAVWLLRQLNVLNDAKEFSRLQGKGSWFSSPADSEEENNESSVADSSDEASDVTPNSFADPSKLLTSDTLDLDHLALENNGGNCVNAAGPPPPPPPFIASNASSDSTLPPPPPSGLVHTSSVPLPPPPPPPPPPPPGPIQTGSIPPPPPLPGTVQIGSSLPPPPPPLPGVTRSAPPPPPPPPPGLTQIGLTPPPPPPPPPVPVRTGSAPPPPPPPPGSVQTGSTPPPPPPPPPGSTRTGSVPPPPPPPPGSTQTGSSPPPPPPPPPGPARIGSGPPPPPPPPGPARTGSAPPPPPGARTGSAPPPPPPPPGCAPPPPPPPGVRTGSAPTAPKPPNAPPPPPPGRGSVPAPPLTAGKASSVPPPPGKASSATTNVGRGRGTGAIAAKKTLLKPLHWVKVSRAVQGSLWADSQKQGSGSRAPEIDISELETLFSAASISDGNSTKGGVRRGSNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLSAVLALDSGVLDIDQVENLIKFCPTKEEMEILKNYAGNKDMLGKCEQFFMELMKVPRVEAKLRVFAFKITFSAQVSDLRINLNTINDATREVKESVKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELIDFDKDLVHLEAASKIQLKALAEEMQAVHKGLEKVEQELTASENDGAISSGFRKVLKNFLDFAEADVRSLISLYADVGRNADSLSQYFGEDPSRCPFEQVTQILVVFVKTFKKSREENERLADAEKKKLEKEAMKDKAANNMHSRKDVVR 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01597 1177 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 338 IPR035892 -
Trre10g01597 1177 MobiDBLite consensus disorder prediction 1145 1177 - -
Trre10g01597 1177 Gene3D Formin, FH2 domain 765 1149 IPR042201 -
Trre10g01597 1177 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Trre10g01597 1177 SMART PTEN_C2_2 198 337 IPR014020 -
Trre10g01597 1177 ProSiteProfiles Formin homology-2 (FH2) domain profile. 764 1164 IPR015425 -
Trre10g01597 1177 MobiDBLite consensus disorder prediction 490 732 - -
Trre10g01597 1177 Pfam Formin Homology 2 Domain 769 1139 IPR015425 -
Trre10g01597 1177 SMART it6_source 438 1173 IPR015425 -
Trre10g01597 1177 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Trre10g01597 1177 MobiDBLite consensus disorder prediction 408 448 - -
Trre10g01597 1177 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 187 IPR029021 -
Trre10g01597 1177 Gene3D - 197 341 - -
Trre10g01597 1177 FunFam Formin-like protein 764 1150 - -
Trre10g01597 1177 ProSiteProfiles C2 tensin-type domain profile. 200 338 IPR014020 -
Trre10g01597 1177 Coils Coil 1045 1065 - -
Trre10g01597 1177 PANTHER FORMIN-J 675 1169 - -
Trre10g01597 1177 MobiDBLite consensus disorder prediction 467 762 - -
Trre10g01597 1177 Coils Coil 1139 1168 - -
Trre10g01597 1177 MobiDBLite consensus disorder prediction 428 448 - -
Trre10g01597 1177 SUPERFAMILY Formin homology 2 domain (FH2 domain) 839 1167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01597 Trre-Chr10 14050166 14058302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01597 727 1147 FH2 protein (formin) Gene Family AT1G31810 76.000 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01597 - - psat:127119864 855.514