Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01587 ATGGAGGAGAACTACGAGGTTCTAGAGGAACTTCACAACGTCGAAGCCGAGTTAGAAGATGTTCAAGAACAAATTAGGGCGTTACTTGAAAAGCAAGAGAGGTTGTATGAGAGAAAATCTGAGTTGAATTCTATTCTGGAAGCTTGTAAAGATTCTGAAAATCAAGTCAATAATGCAAGTTCAAGTACTGTGGAGAATTGGAATGGGCCATTTGAATGGGATTCTCAAGCTGATGATCTTAGATTAAACATTTTTGGTATTGCATCTTACCGTGCAAATCAAAAAGAGATTATTAATGCCATATTGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTAATGGAATTGCTCTAGTTGTCAGTCCTTTACTTTCATTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGCATCCCAGCACATATGTTAACTTCAACAACAAGTAAGGACAATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGTGAGGGGGAACTCAAAATATTATATGTTACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAGTGCCATCATTCTGGTCGTTTTTCTCTAATTTCAATTGATGAGGCACATTGCTGCAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAACCTTGGTATTCTCAAGACTCAGTTCCCGAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCACATTCGTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAATTTATTTTATATGGTAAAGGAAAAGTCATCCGTCAGTAAGGTGGTCGTTGACGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATCATGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGCTAAGGGAGAGAGGAATTTCAGCTGGTCATTATCATGCAGATATGGATGTAAACGATCGTGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGTACGGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGTCGAGATGGGCTTCCCTCTGAATGCCTATTATACTTCAGACCTGGTGATGTTCCCCGGCAGAGTTCAATGGTTTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATAGTGCGATATTGTCAGTCCAAAAGACAATGCCGACGGAGTGCCTTTTTCCGGCATTTTGCTGAGCCATTACAAGAGTGCAACGGGATGTGCGACATATGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCCCGGCATGCAAAATTGATGGTTTCTTTGTTGCAAGATATTCAGGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTCGAGAAAATGAAAACAAAACAGAAGGAAATAGGTTGTGACTTAAAACGAGAGGAAATGGAGCAGCTCATCTTACGCCTTTTACTGGAGCGTGTTTTGAAAGAAGAATTCCAGCATACAGCTTATTCTACAAATGCTTACATTACTGTAGGGCCACTGGCGAAGCAAATTTTGCAAGGGAAGAAAACTGTGATGCTTGAGGTTTCTACAGAAGAGAAAACTAAAGCTTCTGCAAGATTGAAACGTGGCCTCGGTTCATCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCAATCATGGAGGAATACTCCCACACTCTGTCTTGTCTACTCAACAAATCAGCTTACTATGTTCTCAGAAACCAAAGTCACTGGAAGAGGCAAGCTTTATTCATTTGGAGAAAGTAATTGGAAAGTTGAAGACCGAAAAGTATGGAAATAAGATTCTTGAGCAGATTGTAAAATATTCTGATTTCAAGCCGACCGATGAACAAGTAAGTGATGGTAGAGCCGCAAAAAAGTCAAAAACCAAGAAGAACCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCTTGA 2124 0.4063 MEENYEVLEELHNVEAELEDVQEQIRALLEKQERLYERKSELNSILEACKDSENQVNNASSSTVENWNGPFEWDSQADDLRLNIFGIASYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNGIALVVSPLLSLIQDQVMGLTALGIPAHMLTSTTSKDNEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHSGRFSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQESYPNHESGIVYCFSRKECEQVAKELRERGISAGHYHADMDVNDREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSSEVKEVDVSRHAKLMVSLLQDIQASDQRSTMLQLVEKMKTKQKEIGCDLKREEMEQLILRLLLERVLKEEFQHTAYSTNAYITVGPLAKQILQGKKTVMLEVSTEEKTKASARLKRGLGSSGLELKLDELRKELSSNHGGILPHSVLSTQQISLLCSQKPKSLEEASFIHLEKVIGKLKTEKYGNKILEQIVKYSDFKPTDEQVSDGRAAKKSKTKKNLVLIESSEDEA 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01587 707 CDD SF2_C_RecQ 281 417 - -
Trre10g01587 707 Coils Coil 4 38 - -
Trre10g01587 707 Pfam RQC domain 482 586 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre10g01587 707 SMART helicmild6 327 408 IPR001650 -
Trre10g01587 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 424 IPR027417 -
Trre10g01587 707 Gene3D - 10 280 IPR027417 -
Trre10g01587 707 CDD DEXHc_RecQ1 72 280 - -
Trre10g01587 707 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 447 IPR001650 -
Trre10g01587 707 Gene3D - 481 582 IPR036388 -
Trre10g01587 707 Pfam Helicase conserved C-terminal domain 309 407 IPR001650 -
Trre10g01587 707 Gene3D HRDC domain 599 672 IPR044876 -
Trre10g01587 707 ProSiteProfiles HRDC domain profile. 595 679 IPR002121 GO:0003676
Trre10g01587 707 NCBIfam RecQ family ATP-dependent DNA helicase 83 506 IPR004589 GO:0004386|GO:0006310
Trre10g01587 707 SMART ultradead3 86 289 IPR014001 -
Trre10g01587 707 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Trre10g01587 707 FunFam ATP-dependent DNA helicase 481 581 - -
Trre10g01587 707 FunFam ATP-dependent DNA helicase 281 477 - -
Trre10g01587 707 Pfam RecQ zinc-binding 420 476 IPR032284 -
Trre10g01587 707 FunFam ATP-dependent DNA helicase 47 280 - -
Trre10g01587 707 PANTHER DNA HELICASE RECQ FAMILY MEMBER 68 669 - -
Trre10g01587 707 FunFam ATP-dependent DNA helicase 599 674 - -
Trre10g01587 707 Pfam HRDC domain 604 668 IPR002121 GO:0003676
Trre10g01587 707 Gene3D - 281 477 IPR027417 -
Trre10g01587 707 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01587 Trre-Chr10 13858822 13869865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01587 85 422 Eukaryotic Initiation Factors Gene Family AT3G19760 19.263 1.86e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01587 K10899 - gmx:100817635 1149.04