Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01583 ATGTACGGTGGTGGAGGAGTCGGAGACGATGCTCTGGCAGCTCGCTTAGGGATGATAACGCCGTCGTTGCTAATTCCGACGACGTCGTTGATTTCCCGGGAGATATCTCCGGCGCCGGTGAGAGATGAGAGGCTTCCAACTCATCTGCAGTGGAGTCAGCAGGAAACGAGAGAGTTCATAGCTATACGAGCAGAGCTTGAGAGAGACTTCACTGCTTCGAAGAGGAACAAGACGCTTTGGGAAGTGGTGAGTTCAAAGATGAGGGAGAGAGGGTATAGGAGAAGCCCTGAACAATGTAAATGCAAATGGAAGAATCTTGTTAATCGCTATAAGGGAAAAGAGACATCTGATCCAGAGCATGGCAGGCAATGTCCATTTTTTGACGAGTTGCATGCTGTTTTTACTGAAAGAGCACATAACATGCAACGGTTACTTCTTGAATCCGAAACTCGTTCAGCTCAAACAAAGAAAGGAGTGAAAAGACTAAGAAGTGGAGATCGATCTTCAGAGGAATTCTCAGAAGATGACGAGGATGTTGAAGACGACAGTGAAGAGGAGAGACCTGCGAGAAGCAATACCCGTAAAAAGAAAGCTGGCAAAATTGCAACGGAGAAGTCTTCAAGAGCAAACAATGCAAGCAATAGTAATATTCAGGAAATGCTCAAGGAATTTTTCCAGAACCAACTAAGGATGGAGATGCAGTGGAGGGAAATGATGGAAAGGCGTGCGCATGAAAGGCAGTTGTTTGAACAGGAATGGCGGCAGTCAATGGAAAAGCTTGAGAGGGAGAGATTAATGATTGAACAAGAATGGAGGGAGAGAGAAGAGCATAGGAGACTGAGGGAAGAGAGTAGGGCAGAGAGAAGGGACGCTTTGTTGACAACCCTTTTAAACAAACTCATTCACGAATCTAACTAA 918 0.4575 MYGGGGVGDDALAARLGMITPSLLIPTTSLISREISPAPVRDERLPTHLQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGYRRSPEQCKCKWKNLVNRYKGKETSDPEHGRQCPFFDELHAVFTERAHNMQRLLLESETRSAQTKKGVKRLRSGDRSSEEFSEDDEDVEDDSEEERPARSNTRKKKAGKIATEKSSRANNASNSNIQEMLKEFFQNQLRMEMQWREMMERRAHERQLFEQEWRQSMEKLERERLMIEQEWREREEHRRLREESRAERRDALLTTLLNKLIHESN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01583 305 Coils Coil 250 270 - -
Trre10g01583 305 MobiDBLite consensus disorder prediction 145 215 - -
Trre10g01583 305 SMART sant 47 109 IPR001005 -
Trre10g01583 305 Gene3D - 51 112 - -
Trre10g01583 305 FunFam Zinc finger and SCAN domain-containing 20 51 112 - -
Trre10g01583 305 MobiDBLite consensus disorder prediction 153 170 - -
Trre10g01583 305 MobiDBLite consensus disorder prediction 185 203 - -
Trre10g01583 305 Pfam Myb/SANT-like DNA-binding domain 50 132 IPR044822 -
Trre10g01583 305 ProSiteProfiles Myb-like domain profile. 51 107 IPR001005 -
Trre10g01583 305 CDD GT1 50 114 - -
Trre10g01583 305 PANTHER FI21293P1 47 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01583 Trre-Chr10 13839357 13841263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01583 36 305 Trihelix Transcription Factor Family AT2G38250 45.421 7.84e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre10g01583 Myb_DNA-bind_4 2.2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01583 - - gmx:100812635 421.394