Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre10g01582 | ATGACGCGGGGAAAGCAGAAGATTGAAGCGCAGAAGCGAAACGCAGAGAAGAATCAGAAATCAAAAGGCTCTCAGATTGAAGCCAGAGCCGTTGGTCTCAAAATCACATGCCCCATCTGCAAGGCCCAACTTGCAAATCCGAACCAACTTGCTGACCATTATGCCTCCAAACATCCGAAGGAGAAACCTCCTGCAGAGTCAAGCTAG | 207 | 0.4928 | MTRGKQKIEAQKRNAEKNQKSKGSQIEARAVGLKITCPICKAQLANPNQLADHYASKHPKEKPPAESS | 68 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre10g01582 | 68 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 35 | 63 | IPR013087 | - | |
| Trre10g01582 | 68 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Trre10g01582 | 68 | SUPERFAMILY | Expressed protein At2g23090/F21P24.15 | 1 | 65 | - | - | |
| Trre10g01582 | 68 | Pfam | Zinc-finger of C2H2 type | 36 | 57 | - | - | |
| Trre10g01582 | 68 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Trre10g01582 | 68 | PANTHER | GEO09665P1-RELATED | 1 | 66 | IPR045230 | - | |
| Trre10g01582 | 68 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 37 | 58 | IPR013087 | - | |
| Trre10g01582 | 68 | Gene3D | - | 1 | 66 | IPR026939 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre10g01582 | Trre-Chr10 | 13834432 | 13837773 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Trre10g01582 | zf-met | 2.9e-05 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre10g01582 | - | - | gmx:100500226 | 129.413 |