Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01581 ATGGTTATTCATGTGAGTGATTTTGGCATAGTAAGACTCGTCTCAGTCATTGACGGCACCTCTCATAAATATACCAGTACAATTGGAATCAAAGGGAGTGTTGGCTATACTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCCACATGTGGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATGCTTACCGGTAGAAGACCCACAGATGAAGTTTTCAAAGATGGTCAAAATCTGCATAACTTTGTTGCAATTTCCTTTCCTGATAATCTTGGAAATATTGTTGGAACAAAATGGGTCTGA 306 0.3954 MVIHVSDFGIVRLVSVIDGTSHKYTSTIGIKGSVGYTPPEYGMGSEVSTCGDMYSFGILMLEMLTGRRPTDEVFKDGQNLHNFVAISFPDNLGNIVGTKWV 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01581 101 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Trre10g01581 101 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 91 - -
Trre10g01581 101 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01581 101 SUPERFAMILY Protein kinase-like (PK-like) 2 77 IPR011009 -
Trre10g01581 101 Pfam Protein tyrosine and serine/threonine kinase 2 75 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01581 Trre-Chr10 13785894 13786312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01581 1 95 Receptor kinase-like Gene Family AT3G47580 45.833 6.49e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre10g01581 PK_Tyr_Ser-Thr 2.3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01581 - - mtr:11405832 165.236