Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01578 ATGGGCATTTGTCTGATAAAAGGCCAATGGCTGTGGCTTCTGTATGTTTTGCTGATACATATTGTAATTAATAACATTGAAGCGATCAGTCCTGATGGCGAGGCACTTATCAACTTCAGGACAGCAATTACTGGCAATATCCTGTTACAATGGAGGCCTGAGGATCGTGACCCATGTAAATGGAAAGGAGTGAAGTGTGACCCAAAAACCAAGAGAGTGACACATCTGATTCTTTCATCCCATAATTTAATTGGGACTTTATCACCTGACCTTGGGAAGTTAGAGCATCTGAAAGTTATTGATCTTCATTACAACAACCTCTATGGGATAATTCCACCAGAATTGGGAAATTGCACTGAATTACAGGGAATCTTTTTACAGCGTAATTACATTGTTGGAATGATTCCAAGTGAAATAGGAAATCTCTCGCAGCTTCAAAATTTGGATATATCAGACAATCTTCTTACCGGGAATATTCCAGTGTCAATTGGAAAGTTGTATAATCTAAAAAACTTCAATGTATCAACCAATTATCTGGTTGGACCAATACCTTCTGATGGTGTCCTTGCCAACTTTACTGGAAGTTCGTTTGCTGGAAACCCAGGTTTGTGTGGAGTGCAAATCGGTTCAAGATGTAAAGATGATGGTTCGCCTGGGAAAATATATTCTGACCAACAAAATGGAAAGAAGAATAATTCTGCCCGACTTCTCATCAGTGCATCAGCAACTGTGGGCGCACTACTTTTGGTTGCACTTATGTGCTTCTGGGGTTGTTTTCTTTATAAAAAGTTTGGTAAAAATGATAGAGTAAGTCTTGCAATGGATGTTGGTTCAGGTGCCTCAATAGTTATGTTTCATGGAGACCTACCATATTCTTCGAAAGACATTATTAAGAAACTAGAGACTTTGAATGAGGAACACATTATAGGAGTAGGGGGATTTGGAACTGTTTACAAGCTTGCAATGGATGATGGGAATGTATTTGCGTTGAAAAGGATCGTAAAGTTGAATGAGGGTTTTGATCGTTTTTTTGAGAGGGAGCTTGCAATTCTTGGTAGCATCAAGCATCGTTATTTAGTTAATTTACGTGGATATTGCAATTCACCTACATCAAAGTTGTTAATATATGACTACCTACCTGGTGGTAGTCTCGATGAAGTTCTTCATGAAAGATCTGAGCAACTAGACTGGGATTCACGGTTGAATATAATCATGGGAGCTGCAAAGGGGCTTGCTTACTTGCACCATGATTGTTCCCCTAGGATCGTACACCGAGACATAAAATCGAGCAATATTTTGCTGGATGGAAAATTGGATGCTCGGGTTTCTGATTTTGGACTTGCCAAACTTCTGGAGGATGAAGAATCTCACATCACTACTATTGTTGCTGGAACATTCGGTTATCTAGCTCCAGAGTATATGCAAAGTGGCAGAGCAACCGAGAAGACTGACGTCTATAGTTTTGGGGTGTTGACACTTGAAGTGCTTAGTGGAAAACGGCCAACAGACGCATCGTTCATTGAAAAGGGTCTCAATATTGTTGGTTGGTTGAATTTTCTTATTACTGAAAATAGGCCAAGGGAAATTGTCGACCCACTATGTGACGGGGTGCAGGTGGAGAGCCTTGATGCGTTGCTCTCTATGGCTATTCAATGTGTTTCCTCAAGTCCAGAGGATCGACCGACTATGCACCGAGTGGTCCAGTTGCTTGAATCGGAGATTGTAACTCCATGCCCAAGTGACTTCTATGACTCGAGCTCTGACTAG 1767 0.4092 MGICLIKGQWLWLLYVLLIHIVINNIEAISPDGEALINFRTAITGNILLQWRPEDRDPCKWKGVKCDPKTKRVTHLILSSHNLIGTLSPDLGKLEHLKVIDLHYNNLYGIIPPELGNCTELQGIFLQRNYIVGMIPSEIGNLSQLQNLDISDNLLTGNIPVSIGKLYNLKNFNVSTNYLVGPIPSDGVLANFTGSSFAGNPGLCGVQIGSRCKDDGSPGKIYSDQQNGKKNNSARLLISASATVGALLLVALMCFWGCFLYKKFGKNDRVSLAMDVGSGASIVMFHGDLPYSSKDIIKKLETLNEEHIIGVGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELAILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEVLHERSEQLDWDSRLNIIMGAAKGLAYLHHDCSPRIVHRDIKSSNILLDGKLDARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLTLEVLSGKRPTDASFIEKGLNIVGWLNFLITENRPREIVDPLCDGVQVESLDALLSMAIQCVSSSPEDRPTMHRVVQLLESEIVTPCPSDFYDSSSD 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01578 588 SUPERFAMILY L domain-like 43 194 - -
Trre10g01578 588 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre10g01578 588 Gene3D Transferase(Phosphotransferase) domain 1 379 576 - -
Trre10g01578 588 SUPERFAMILY Protein kinase-like (PK-like) 286 570 IPR011009 -
Trre10g01578 588 ProSiteProfiles Protein kinase domain profile. 303 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01578 588 Pfam Protein kinase domain 305 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01578 588 Gene3D Phosphorylase Kinase; domain 1 275 378 - -
Trre10g01578 588 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 189 - -
Trre10g01578 588 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 379 581 - -
Trre10g01578 588 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 277 378 - -
Trre10g01578 588 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 71 571 - -
Trre10g01578 588 SMART serkin_6 303 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01578 588 Gene3D Ribonuclease Inhibitor 30 213 IPR032675 -
Trre10g01578 588 ProSitePatterns Protein kinases ATP-binding region signature. 309 335 IPR017441 GO:0005524
Trre10g01578 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01578 Trre-Chr10 13745877 13752985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01578 1 579 Receptor kinase-like Gene Family AT2G35620 74.010 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Trre10g01578 Pkinase 9.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01578 - - tpra:123907561 1129.01