Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01572 ATGTCAAAGGGTTTTGGCTTTGTGAACTTCGATAATCCGGATGATGCTAAAAAGGCAATTGAAGCAATGAATGGATTGCAACTTGGTTCAAAGATTCTCTATGTAGCCCGGGCACAGAAGAAGGCTGGGCGTGAGCAGATCTTGCACCAGAAGTTCGAAGAGAAACGAAAGGAACAAGTCTTGAAATATAAGGATTCATGTTTCATGCCTATGGCATTGAGGCCAGGATGGAGGGCAAATGGCTCTGCACCTCCTGCAAGATCATTCCAACAATCACCCGCACCGGTTGTTTCTAGTAATACTAGGCAGCATAGGCAAAATAGGGGCAGGATGAATGGCCATGCAGCATCACAGGGAAATACTCACTCTGGTATGCCACAAGCCCAGCAGGCTTCTCAGTCAGTGATCTCTTCAAGAGAGTCAAGTACTCAGCAAAGAACCGGACAGGCTAAGTACGTACCTGGTGGGCGCCACCGTGAGATGGAAAAAGGATCTGGATTCTCATGTAGTGGTTCAAACTCTGGTGGAGGCGCCCAGGGATCAGAAGTGCTGCACAACATGCTTGCTAATGCTACTCCAGAGCAGCAGAAAGAGATACTAGGCGAGCATCTCTACATGCTTGTCCAGAAACTCAAGCCTAACCTAGCAGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGCTGAATTGCTGGTTCTCATGGAATCACCAGTGTCTCTTTCTGCCAAGGTGGAAGAAGCTTTCCAAGTGCTGAAGACCTGTCTCAATTCCTGTCAAAGCTCTCTGTGTCATTTCAAGGCTGCTTACCTAAAGCTAACCCCATCTTCGACGAATGGACAAAACATCTTGAGATTGATTGTCACGTGA 870 0.4713 MSKGFGFVNFDNPDDAKKAIEAMNGLQLGSKILYVARAQKKAGREQILHQKFEEKRKEQVLKYKDSCFMPMALRPGWRANGSAPPARSFQQSPAPVVSSNTRQHRQNRGRMNGHAASQGNTHSGMPQAQQASQSVISSRESSTQQRTGQAKYVPGGRHREMEKGSGFSCSGSNSGGGAQGSEVLHNMLANATPEQQKEILGEHLYMLVQKLKPNLAAKITGMLLEMDNAELLVLMESPVSLSAKVEEAFQVLKTCLNSCQSSLCHFKAAYLKLTPSSTNGQNILRLIVT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01572 289 FunFam Polyadenylate-binding protein 178 262 - -
Trre10g01572 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 86 261 - -
Trre10g01572 289 Pfam Poly-adenylate binding protein, unique domain 187 252 IPR002004 GO:0003723
Trre10g01572 289 SUPERFAMILY PABC (PABP) domain 184 258 IPR036053 GO:0003723
Trre10g01572 289 MobiDBLite consensus disorder prediction 78 178 - -
Trre10g01572 289 Gene3D - 179 255 - -
Trre10g01572 289 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 180 257 IPR002004 GO:0003723
Trre10g01572 289 MobiDBLite consensus disorder prediction 84 150 - -
Trre10g01572 289 Gene3D - 1 67 IPR012677 -
Trre10g01572 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 40 IPR000504 GO:0003723
Trre10g01572 289 SMART poly_2 192 255 IPR002004 GO:0003723
Trre10g01572 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 32 IPR000504 GO:0003723
Trre10g01572 289 SUPERFAMILY RNA-binding domain, RBD 2 46 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01572 Trre-Chr10 13515645 13519408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01572 1 59 Eukaryotic Initiation Factors Gene Family AT2G36660 59.322 3.24e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01572 K13126 - gmx:100779547 296.204