Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01558 ATGTCTGATCAATTTGATCTGATTATTAAGGCTTCTTTCTGTTTCTCAAACCATTCAGCGCCTTGGCATGAGTGTCGAAGCAGGTATCATGTTCACAAGAAGGGTTTCGCTTTCCTTAGACGCTTCGACACCATTGTGGACTTAGAATATTTTGTCAAATTTCTCCATTTTACAAGCTATCACATTCACCTCAACAAACTTTCTTTTCGCTTCATTCTTCAATTCAGAATGGAGAACACAAGATTATGCCAATGGTTAAACCTTCTGGTGTTTGTACTGGTATGGCTCAAGGCAGAAGCTGCTTATGTACCAATCACTTATGTCCACAACGCGGTGTTAAAAGGAGCCGTTTGTTTGGATGGTAGTCCACCAGCTTACCATTTAGATAAAGGATTTGGAACAGGAATTAACAGTTGGTTAGTTCAATTTGAGGGAGGAGGATGGTGCAATAATGTCACGACTTGCCTTGGTCGCAAGACGAATCGTTTAGGTTCATCTAAGAAAATGGCTAATCAAATTGCATTTTCAGGAATTTTAAATAACAGGAGACAGTATAATCCAGATTTCTACAATTGGAACAGAATCAAGGTTCGATATTGCGATGGTTCATCTTTTACTGGCGACGTAGAAGCAGTCAATCCAGTAACAAAATTACACTTCAGAGGAGCAAGAGTTTTCAATGCTGTCATGGAAGAGTTGTTAGCAAAAGGAATGAAAAATGCTCAAAATGCTATTATCTCAGGATGTTCAGCTGGTGGATTGACTTCAATACTTCATTGTGATCGCTTTCGAGCTCTTTTACCGAGTGGAGCTAGAGTGAAATGTCTCTCAGATGCTGGTTACTTTATAAACGCAAGGGATGTATCTGGAACACAGCACATTGAACAATTCTTCAGTCAAGTTGTTACAACACATGGCTCCGCAAAGAATTTGCCTAAATCATGCACTTCAAGACTCAGTCCAAGGCTGTGTTTTTTCCCTCAATATGTTGTATCACAAATCACCACACCAATCTTCTTTGTAAACGCGGCATACGACTCATGGCAGATTAAGAACATTTTGGCGCCGGGTGTTGCTGATCCTCAGGGACACTGGCATAGCTGCAAGCTAGATATAAACAACTGCTCTTCTAATCAACTTGATCTAATGCAAGGCTTTAGAACACAATTTCTAAGAGCATTGACTGTTCTAGGAAACTCTCCATCCAAAGGAATGTTCATAGACTCTTGCTATGCTCATTGCCAAACTGAAATGCAAGAATCATGGTTTCTAAGTGACTCTCCATTGTTGGCCAAGACAACCATTGCACAAGCTGTAGCAGACTGGTTTTTCGAAAGAAGGCTTTTCCATCAGATAGATTGTCCTTACCCTTGCAATCCGACTTGTCCGAACCGTGCTTTTGAACCACAAGACAACCCAGGAAAAAATGTGACTACCAAAGGAACTTCATCAGGTGCATCAGCTATAAAGCCAAGTTTTCAAAAACTATCAAACAAGGCACAATGGATTGAGCTTTTATGCTTTAGAACCGGTTGGCTTCTACTAACGTTGTTTATTCTGGTCATCCTATAA 1572 0.4033 MSDQFDLIIKASFCFSNHSAPWHECRSRYHVHKKGFAFLRRFDTIVDLEYFVKFLHFTSYHIHLNKLSFRFILQFRMENTRLCQWLNLLVFVLVWLKAEAAYVPITYVHNAVLKGAVCLDGSPPAYHLDKGFGTGINSWLVQFEGGGWCNNVTTCLGRKTNRLGSSKKMANQIAFSGILNNRRQYNPDFYNWNRIKVRYCDGSSFTGDVEAVNPVTKLHFRGARVFNAVMEELLAKGMKNAQNAIISGCSAGGLTSILHCDRFRALLPSGARVKCLSDAGYFINARDVSGTQHIEQFFSQVVTTHGSAKNLPKSCTSRLSPRLCFFPQYVVSQITTPIFFVNAAYDSWQIKNILAPGVADPQGHWHSCKLDINNCSSNQLDLMQGFRTQFLRALTVLGNSPSKGMFIDSCYAHCQTEMQESWFLSDSPLLAKTTIAQAVADWFFERRLFHQIDCPYPCNPTCPNRAFEPQDNPGKNVTTKGTSSGASAIKPSFQKLSNKAQWIELLCFRTGWLLLTLFILVIL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01558 523 PANTHER NOTUM-RELATED 84 464 IPR004963 GO:0016787
Trre10g01558 523 Pfam Pectinacetylesterase 97 447 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01558 Trre-Chr10 13355864 13364681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01558 81 473 Carbohydrate Esterase AT4G19420 64.019 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01558 K19882 - gmx:100776478 759.214