Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01557 ATGGGCTCTAGTGGCAGTAAAGCTACTACTTCTTGTAGTTCATCATCTTCTTCTTCTTCTTGCAGATTACAAAAGGGTCGATCCAAACGGTATATAGGTTTTCCTTCTTATTGTCTTGGAACAACTTCTGGATCTCGTGACAGTGATAATGATGACCAGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATACCAACAGCAATGATATCGACTCGGATGAAGTGAAATCAGAGTCTTTTAGAAAAGTTAAATCTGATGAAGTACCTTGTATGCCTTCTAACATTGATCTTGATGAGTGGAGTCACACTGAATCCAGAACTGCTAGCAGCTCCGCACATGGTTCTTCAACTCAGTCTACAAACCCTACAAGTCGGTTCCTTTCTCGTTTTAGCCTCATTCCGGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCTCGACCTTGTCCTGTTTCATCGGCAGGTCTTTCAATGTTTAACAATGAAGACGAGCTTAGTCTACATAATAGAAATGAAACTCAACAATGTAGCGGTCGGCTTAATACATCTTTTGTTAATCGAGTCCCTGTACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCAAATGCCCCGGCATTTGGCTTTGCTGGCAATTTGTCGAGCAGTCCTACGCTGTCTCCTATCCAGGATATTGTTAGAGATGGGTATGCTACACGAGACATGCCTGGTATGAACATGTTTTCTCCAAGAGTTCACAATGAGACGGGAAATGTTGAGACTAGACATATGGATAGACGAAATGGAGCTCAAGAACCCGTTGACCGCAATGTTCGTTTCAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCACCGTCGATCAGGATTGGCTGACTTCACCTTTTGCCCTCTGCAACAAGAGAGAGAATTAAGAGATGCTAGTGAGGATAGTGGAAGACAAGTAGGGGAGATGGGTACAAGAGTGTCATCATCGAATCGTAATGCTTTAAATTCTCATACTACATCTGGATATCCTCTACCGAACATGTCTAACTCCACATTTAGCAACCAAGACTATGAGGTCGAGGCTTCACGGTCAAGAGAAACTAGATATCAGGATCTACTGGAACATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCAGGTTTGAAAATCTTTCTGGACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTACATGCAGAATAACTAATCGCGATAACAATTCAAATTCAAATGATGATACAAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCTTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCTGTGGTTTTATCTTCCCGACCTTCTGTATCTTCTATCGGATCTGTCCCCGCACCTGCTGAAGTTGTTGAATCCTTACCTGTTAAATTATACACAAAATCACACAAACATCAAGAAGAACCACTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGAGAGTACTGCCTTGCCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTATGTCGGGGGGACATTTGTATATCAGATTCACTGCCAACAACAGAGAACTAA 1701 0.4162 MGSSGSKATTSCSSSSSSSSCRLQKGRSKRYIGFPSYCLGTTSGSRDSDNDDQVCDQNKVNGSDTNSNDIDSDEVKSESFRKVKSDEVPCMPSNIDLDEWSHTESRTASSSAHGSSTQSTNPTSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSAGLSMFNNEDELSLHNRNETQQCSGRLNTSFVNRVPVQYHEDASNNLSSNAPAFGFAGNLSSSPTLSPIQDIVRDGYATRDMPGMNMFSPRVHNETGNVETRHMDRRNGAQEPVDRNVRFSRTLSVGRLRDRVHRRSGLADFTFCPLQQERELRDASEDSGRQVGEMGTRVSSSNRNALNSHTTSGYPLPNMSNSTFSNQDYEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRNGRCTCRITNRDNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKSHKHQEEPLQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPTTEN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01557 566 Pfam Ring finger domain 509 552 IPR001841 -
Trre10g01557 566 MobiDBLite consensus disorder prediction 69 85 - -
Trre10g01557 566 FunFam Putative RING zinc finger domain superfamily protein 479 557 - -
Trre10g01557 566 SUPERFAMILY RING/U-box 490 558 - -
Trre10g01557 566 MobiDBLite consensus disorder prediction 41 123 - -
Trre10g01557 566 MobiDBLite consensus disorder prediction 323 351 - -
Trre10g01557 566 ProSiteProfiles Zinc finger RING-type profile. 510 552 IPR001841 -
Trre10g01557 566 MobiDBLite consensus disorder prediction 1 26 - -
Trre10g01557 566 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Trre10g01557 566 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 563 - -
Trre10g01557 566 SMART ring_2 510 551 IPR001841 -
Trre10g01557 566 MobiDBLite consensus disorder prediction 310 351 - -
Trre10g01557 566 MobiDBLite consensus disorder prediction 1 25 - -
Trre10g01557 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 473 556 IPR013083 -
Trre10g01557 566 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01557 Trre-Chr10 13344857 13348458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01557 47 566 C3H Transcription Factor Family AT5G45290 46.703 3.14e-120 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01557 - - gmx:100786091 796.964