Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01555 ATGAAGAACATAAACGAAGATGCTTCCACACAAGATCTCGACCTTCAAAGCGATCACAGCTCCGATTACTTAGCTCAACCACAACCTCGCCGTCTCCGCGGCTTCGCTGCCACGGCGGCGGGAACCAATTCCACCGGAAAAGGAAAAAAAGAGAGAGAAAAAGAAAAGGAACGAACGAAGCTCCGAGAACGACACCGTCGAGCAATCACCAGCCGAATGTTAGCTGGACTCCGTCAGTATGGTAATTTCCCTTTACCGGCGCGTGCTGACATGAACGACGTACTCGCTGCTCTAGCGCGTGAAGCTGGTTGGATTGTTGATGCTGATGGAACTACCTATCGCCAGTGTCTTCCTCCTTCTCATATGGGATCATTTGTGGCAAGGTCAGTTGAAAGTCAACTATCTGGCGGTTCTTTGAGAACTTCGTCTGTTAAGGAAACACTAGAGAATCCGCCACCAATACTTAGAATAGATGAATGCTTGTCACCTGCATCTATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAATGGAAAATACGCAAGTGTAAGCCCCATTAATCCAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAAATATTCATTCTGGGGTGCATGAAAATGACTTCAATTGCACACCTTATGTTCCTGTTTACGCAAAACTTCCAGCTGGTATTATTAATAAATTTTGCCAGTTGATGGATCCTGAAGACATTAGGCAGGAGTTAATCCATATTAAGTCCTTAAATATTGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATATGTGTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAGCTAAATTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCGTTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTTTTCACAGATCGTGAAGGACGGAGGAATACCGAATGCCTATCTTGGGGAATTGACAAAGAGCGGGTTCTCAAAGGAAGAACTGGAATTGAGGTATATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGCTTGATTGATGCTGTAGAAATTGGACTTGGAGCATCCGGGGAGCTGAAATACCCTTCTTTTTCAGAAAGGATGGGGTGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACTTGCAACATAGTCTGCGCAAAGCAGCCAAACTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGACAATGCCGGGACCTACAACTCTATGCCGCATGAGACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTATTACGGACGCTTCTTCTTACATTGGTACTCCCAGACTTTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAAGCCTTGCTTTTGAGGAAACAAAAATTATTGTCAAGATTCCTGCTGTATACTGGTGGTACAAGACTCCTAGTCATGCACCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGGATGGATACTCTCCTGTGTTTGAGGTTCTGAAAAAACACGCCGTCACCATGAAATTTGTCTGCATAGGATTTAATCTTTCCAGCCAGGATGCTAATGACTCATTGGTTGATCCAGAGGGATTGAGTTGGCAGGTATTAAACTCAGCTTGGGAACGGGGGTTGGTCACTGCTGGAGAGAATGCACTATTTTGCTTTGATAGAGAAAGGTATAAGAGATTGGTTGAGATGGCAAAACCCAGAAATGATCCTGATCAACGACACTTTTCGTTCTTTGTTTATCAGCAACCATCTTTGCTTCAGGGAAATGTTTGCTTGTCGGAATTGGATTTCTTCATCAAATGCATGCATGGTGAGATGACTGGAGATATGTAA 1950 0.4359 MKNINEDASTQDLDLQSDHSSDYLAQPQPRRLRGFAATAAGTNSTGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWIVDADGTTYRQCLPPSHMGSFVARSVESQLSGGSLRTSSVKETLENPPPILRIDECLSPASIDSVVIAERDSKNGKYASVSPINPVDCLEADQLMQNIHSGVHENDFNCTPYVPVYAKLPAGIINKFCQLMDPEDIRQELIHIKSLNIDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIIREFKLNLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLIDAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRKAAKLRGHSFWARGPDNAGTYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLASLAFEETKIIVKIPAVYWWYKTPSHAPELTAGYHNPTNQDGYSPVFEVLKKHAVTMKFVCIGFNLSSQDANDSLVDPEGLSWQVLNSAWERGLVTAGENALFCFDRERYKRLVEMAKPRNDPDQRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHGEMTGDM 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01555 649 Gene3D Glycosidases 207 648 - -
Trre10g01555 649 MobiDBLite consensus disorder prediction 1 63 - -
Trre10g01555 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 494 510 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 272 290 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 294 315 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 529 552 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 460 479 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 251 265 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 567 589 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 387 409 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 511 522 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 MobiDBLite consensus disorder prediction 46 63 - -
Trre10g01555 649 Pfam Glycosyl hydrolase family 14 235 616 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 SUPERFAMILY (Trans)glycosidases 211 645 IPR017853 -
Trre10g01555 649 Pfam BES1/BZR1 plant transcription factor, N-terminal 46 192 IPR008540 -
Trre10g01555 649 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 158 644 IPR001554 GO:0000272|GO:0016161
Trre10g01555 649 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01555 Trre-Chr10 13322887 13329931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01555 59 645 Glycoside Hydrolase AT5G45300 70.458 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Trre10g01555 Glyco_hydro_14 2e-85 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01555 K01177 - gmx:100777004 1178.31