Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01548 ATGGATATGCATCACAGTGGAATGGATGGGATGTCAATGCCACCAAAATCATCTACCAATGGTAGTACCATGATGATGGATCATAATAAGATGATGATGCATATGACATTCTTCTGGGGCAAGGATGCTTTGATTCTCTTCAATGATTGGCCTGCTGGTAAAACTGGTAATTATTTGTTGGCATTGTTCATGGTTTTTGCCATGTCTGTACTCATCGAGTTACTCTCTTATCACACCCGCTTCATCAAACCGGGTTCCAACCCTATGGTGGTTCGTTTAGTTCAGACGCTTTTGCATGTTCTTAGGGTTGGATTAGCTTATTTGGTTATGTTAGCACTTATGTCTTTTAATGGTGGTGTCTTCTTGGTTGCTGTCCTTGGTCATGCTCTTGGATTCTTCTTCTGTAACCGTTCTTTCAAAAAACCACTTCATGATGTTTTTCCTGATCCTATGGCTTGTTAA 462 0.4048 MDMHHSGMDGMSMPPKSSTNGSTMMMDHNKMMMHMTFFWGKDALILFNDWPAGKTGNYLLALFMVFAMSVLIELLSYHTRFIKPGSNPMVVRLVQTLLHVLRVGLAYLVMLALMSFNGGVFLVAVLGHALGFFFCNRSFKKPLHDVFPDPMAC 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01548 153 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 24 141 IPR007274 GO:0005375|GO:0016020|GO:0035434
Trre10g01548 153 Pfam Ctr copper transporter family 90 135 IPR007274 GO:0005375|GO:0016020|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01548 Trre-Chr10 13275395 13275856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01548 36 153 Inorganic Solute Cotransporters AT5G59030 45.669 1.97e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01548 K14686 - gmx:100306175 192.971