Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01543 ATGTTTCCAACATTTGCATTTTGTTTATCTCTTCTCTTTGCTTTCAACTTCATCCAAAACACAAATACCTCTTCCTTAGGAAACAAAACAGATAACTTGGCATTGCTCAAATTCAAAGAATCAATATCTAATGACCCATATGGAATCTTGGCCTCTTGGAATACTTCAACTCACTACTGGGAGATTCCTACAAACTTGTCAAGTTGCTCTGATCTTGAAGTCTTGTTCTTATCTAGCAATCATTTGATTGGTAAAATACCAACTGGAATCAACTCTCTTCGTAAGCTTCAGATGTTGCAAATTTCAAATAACAATTTAACCGGAAGAATTCCACCATTCATAGGGAATCTTTCATCCTTAGTTCTTCTTCATATGACTAAGAATCACTTAGAGGGAGATATTCCACAAGAAATATGCAGCCTCAAACATTTGACTACAATTGCTGTGTCTCAGAACAGAATATATGGTACATTTCCTTCTTGTCTTTATAATATGTCTTCTCTTACTGCGATCTCAGTTGCAGCCAATGAATTTAATGGACCTCTTCCACCTAATATGTTTAACACCCTCTCCAATCTTCAAGAATTCTTAATTGGAGGAAACCAATTCTCAGGTACAATTCCTATTTCCATTGGAAATGCTTCTGTCCTACAAGCACTCGACTTATCTAGAAACAATTTGGTCGGACAAGTTCCAAGTCTAGGGAAGTTACATGATATTCAATGGATAAGTCTAGAATTTAACAATTTAGGGAACGCTTTCAACGGAACCATACCAACCTCGTTGGGTTCACTAAAAGGTGAGGTACCAACATATGGTGTCTTTGGAAATGTAAGCAGGTTAGCTGTGACTGGAAACAATAAGCTTTGTGGAGGTATTTCAAAGCTTCATCTACAACCATGCCATGTTAAAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGCATCAGAAGGTAAAGTTGTTGCCATAAAGGTCCTCAACCTTAAAAAAAAAGGAGCTCAGAAGAGTTACATTGCTGAATATTACAAAGGTCAAGAATTTAAGGCATTAGTGTTTGAATACATGAGCAATGGAAGCATAGAACAATGGCTACATCCAGAGACAGTGAATGCAGGGAATCAAAGAATGTTGGACCTTGATCAAAGATTTAATATCATTGTCGACATTGCTTCTGTATTACATTACCTTCATCATGACTGTGAGCAAACAATCATTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCGTGTGAGTGATTTTGGCATAGCAAGACTAGTCTCAGTCGTTGACGACACCTCTCACCAGGAAACTAGTACACTTGGAATTAAAGGGACTATCGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTCAAATATCTACATATGGTGACATGTATAGCTTTGGGGTGCTTTTGTTGGAAATGCTTACCGGAAGAAGACCGGCAGATGAAATGTTTGAAGATGGCCAAAATCTACACATGTTTGTTGAAAATTCATTTCCTAATAATCTTATACAGATTTTGGACCCACATCTTCTACCAAGAAATGAAGAAGCAACAATAGAAGATGGAAACATTGGGAGTTTCACTCCAATTTCAGAGAAGTGTTTAGTTTCACTTTTTCGGATTGGACTTGCTTGTTCAGTGGAATCCCCAAAAGATAGAATGAATATAGTTGATGTTACCAGAGAGCTAAGCTTGATCAAAAAGGCCTTTCTCGCTGGTGAGATTGATTGA 1761 0.3759 MFPTFAFCLSLLFAFNFIQNTNTSSLGNKTDNLALLKFKESISNDPYGILASWNTSTHYWEIPTNLSSCSDLEVLFLSSNHLIGKIPTGINSLRKLQMLQISNNNLTGRIPPFIGNLSSLVLLHMTKNHLEGDIPQEICSLKHLTTIAVSQNRIYGTFPSCLYNMSSLTAISVAANEFNGPLPPNMFNTLSNLQEFLIGGNQFSGTIPISIGNASVLQALDLSRNNLVGQVPSLGKLHDIQWISLEFNNLGNAFNGTIPTSLGSLKGEVPTYGVFGNVSRLAVTGNNKLCGGISKLHLQPCHVKGSFGSVYKGNLASEGKVVAIKVLNLKKKGAQKSYIAEYYKGQEFKALVFEYMSNGSIEQWLHPETVNAGNQRMLDLDQRFNIIVDIASVLHYLHHDCEQTIIHCDLKPSNVLLDDDMVARVSDFGIARLVSVVDDTSHQETSTLGIKGTIGYAPPEYGMGSQISTYGDMYSFGVLLLEMLTGRRPADEMFEDGQNLHMFVENSFPNNLIQILDPHLLPRNEEATIEDGNIGSFTPISEKCLVSLFRIGLACSVESPKDRMNIVDVTRELSLIKKAFLAGEID 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01543 586 Gene3D Transferase(Phosphotransferase) domain 1 357 582 - -
Trre10g01543 586 Pfam Leucine rich repeat N-terminal domain 29 57 IPR013210 -
Trre10g01543 586 Gene3D Phosphorylase Kinase; domain 1 296 356 - -
Trre10g01543 586 FunFam Nuclear pore complex protein NUP107 28 184 - -
Trre10g01543 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Trre10g01543 586 SMART serkin_6 298 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01543 586 SUPERFAMILY L domain-like 31 291 - -
Trre10g01543 586 SUPERFAMILY Protein kinase-like (PK-like) 304 573 IPR011009 -
Trre10g01543 586 ProSiteProfiles Protein kinase domain profile. 296 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01543 586 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 304 577 - -
Trre10g01543 586 Gene3D Ribonuclease Inhibitor 26 295 IPR032675 -
Trre10g01543 586 Pfam Protein kinase domain 341 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01543 586 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 356 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01543 Trre-Chr10 13243450 13246601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01543 61 581 Receptor kinase-like Gene Family AT3G47580 32.673 3.06e-93 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre10g01543 Pkinase 2.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01543 - - mtr:25486456 478.018