Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01542 ATGTTTCCAACATTTGCATTTTGTTTATCTCTTCTCTTTGCTTTCAACTTCATCCAAAACACAAATACCTCTTCCTTAGGAAACAAAACAGATAACTTGGCATTGCTCAAATTCAAAGAATCAATATCTAATGACCCATATGGAATCTTGGCCTCTTGGAATACTTCAACTCACTACTGGGAGATTCCTACAAACTTGTCAAGTTGCTCTGATCTTGAAGTCTTGTTCTTATCTAGCAATCATTTGATTGGTAAAATACCAACTGGAATCAACTCTCTTCGTAAGCTTCAGATGTTGCAAATTTCAAATAACAATTTAACCGGAAGAATTCCACCATTCATAGGGAATCTTTCATCCTTAGTTCTTCTTCATATGACTAAGAATCACTTAGAGGGAGATATTCCACAAGAAATATGCAGCCTCAAACATTTGACTACAATTGCTGTGTCTCAGAACAGAATATATGGTACATTTCCTTCTTGTCTTTATAATATGTCTTCTCTTACTGCGATCTCAGTTGCAGCCAATGAATTTAATGGACCTCTTCCACCTAATATGTTTAACACCCTCTCCAATCTTCAAGAATTCTTAATTGGAGGAAACCAATTCTCAGGTACAATTCCTATTTCCATTGGAAATGCTTCTGTCCTACAAGCACTCGACTTATCTAGAAACAATTTGGTCGGACAAGTTCCAAGTCTAGGGAAGTTACATGATATTCAATGGATAAGTCTAGAATTTAACAATTTAGGGAACGCTTTCAACGGAACCATACCAACCTCGTTGGGTTCACTAAAAGGTGAGGTACCAACATATGGTGTCTTTGGAAATGTAAGCAGGTTAGCTGTGACTGGAAACAATAAGCTTTGTGGAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGCATCAGAAGGTAAAGTTGTTGCCATAAAGGTCCTCAACCTTAAAAAAAAAGGAGCTCAGAAGAGTTACATTGCTGAATATTACAAAGGTCAAGAATTTAAGGCATTAGTGTTTGAATACATGAGCAATGGAAGCATAGAACAATGGCTACATCCAGAGACAGTGAATGCAGGGAATCAAAGAATGTTGGACCTTGATCAAAGATTTAATATCATTGTCGACATTGCTTCTGTATTACATTACCTTCATCATGACTGTGAGCAAACAATCATTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCGTGTGAGTGATTTTGGCATAGCAAGACTAGTCTCAGTCGTTGACGACACCTCTCACCAGGAAACTAGTACACTTGGAATTAAAGGGACTATCGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTCAAATATCTACATATGGTGACATGTATAGCTTTGGGGTGCTTTTGTTGGAAATGCTTACCGGAAGAAGACCGGCAGATGAAATGTTTGAAGATGGCCAAAATCTACACATGTTTGTTGAAAATTCATTTCCTAATAATCTTATACAGATTTTGGACCCACATCTTCTACCAAGAAATGAAGAAGCAACAATAGAAGATGGAAACATTGGGAGTTTCACTCCAATTTCAGAGAAGTGTTTAGTTTCACTTTTTCGGATTGGACTTGCTTGTTCAGTGGAATCCCCAAAAGATAGAATGAATATAGTTGATGTTACCAGAGAGCTAAGCTTGATCAAAAAGGCCTTTCTCGCTGGTGAGATTGATTGA 1722 0.3763 MFPTFAFCLSLLFAFNFIQNTNTSSLGNKTDNLALLKFKESISNDPYGILASWNTSTHYWEIPTNLSSCSDLEVLFLSSNHLIGKIPTGINSLRKLQMLQISNNNLTGRIPPFIGNLSSLVLLHMTKNHLEGDIPQEICSLKHLTTIAVSQNRIYGTFPSCLYNMSSLTAISVAANEFNGPLPPNMFNTLSNLQEFLIGGNQFSGTIPISIGNASVLQALDLSRNNLVGQVPSLGKLHDIQWISLEFNNLGNAFNGTIPTSLGSLKGEVPTYGVFGNVSRLAVTGNNKLCGGSFGSVYKGNLASEGKVVAIKVLNLKKKGAQKSYIAEYYKGQEFKALVFEYMSNGSIEQWLHPETVNAGNQRMLDLDQRFNIIVDIASVLHYLHHDCEQTIIHCDLKPSNVLLDDDMVARVSDFGIARLVSVVDDTSHQETSTLGIKGTIGYAPPEYGMGSQISTYGDMYSFGVLLLEMLTGRRPADEMFEDGQNLHMFVENSFPNNLIQILDPHLLPRNEEATIEDGNIGSFTPISEKCLVSLFRIGLACSVESPKDRMNIVDVTRELSLIKKAFLAGEID 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01542 573 FunFam Nuclear pore complex protein NUP107 28 184 - -
Trre10g01542 573 SMART serkin_6 283 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01542 573 ProSiteProfiles Protein kinase domain profile. 283 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01542 573 Gene3D Transferase(Phosphotransferase) domain 1 343 569 - -
Trre10g01542 573 Pfam Leucine rich repeat N-terminal domain 29 57 IPR013210 -
Trre10g01542 573 SUPERFAMILY Protein kinase-like (PK-like) 287 560 IPR011009 -
Trre10g01542 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Trre10g01542 573 Gene3D Ribonuclease Inhibitor 26 296 IPR032675 -
Trre10g01542 573 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 343 572 - -
Trre10g01542 573 SUPERFAMILY L domain-like 31 291 - -
Trre10g01542 573 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 292 564 - -
Trre10g01542 573 Pfam Protein kinase domain 287 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01542 Trre-Chr10 13243450 13246601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01542 62 567 Receptor kinase-like Gene Family AT3G47570 35.195 1.87e-98 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre10g01542 Pkinase 7.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01542 - - cave:132188124 481.87