Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01541 ATGGCTTCAAGGAGGGCATATTTAACATTTCACAAGAATCCACCCGATGACTCTGTTATTTCGATGTGTGGCCATGTCTTCTGTTATCAATGCGTATCAGAGCATTTGACATGTGATGATAATATGTTCCCTGCAGTTCATTGTAAAGAACAACTTGGTGAAGATCTTGTTTTATCCAAAGCAATTTTGAGGAGTTGCATCTTCTGA 207 0.3865 MASRRAYLTFHKNPPDDSVISMCGHVFCYQCVSEHLTCDDNMFPAVHCKEQLGEDLVLSKAILRSCIF 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01541 68 ProSitePatterns Zinc finger RING-type signature. 23 32 IPR017907 -
Trre10g01541 68 SUPERFAMILY RING/U-box 14 42 - -
Trre10g01541 68 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 59 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01541 Trre-Chr10 13239937 13240967 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01541 13 67 RAD5 or RAD16-like Gene Family AT1G50410 54.545 2.76e-21 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01541 - - tcc:18608439 94.7449