Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01538 ATGGTTGATTTTATTTCCAAAACTGGAAATTATTCTTTTAAGGATTCAAAGGCTTTTCACAGTTTTATGAAGAATTCGATTGGTGCTGAGATAAGTACCAAACAATTAAAATGGAAGGTTCGTGATTTTAAGGAGAAGTTTGAAAGAGGAAAATGGAAATATGATGATAAGACAGATATTGGACTTTTAAAGAAGATTGACTGGGCAAATAATGGTGGGAATGAAGTTGGAAAAGGAAATGAAAAAGTTATTGCTGAGAAATGGACTAAGAATGATGCTGATATTAGTTTGCATGTGAATGAAAGTGATGATGATATTAGTTTGCTTGTGAATGAAATGTCATCATCACTTTCATACACATGA 363 0.3168 MVDFISKTGNYSFKDSKAFHSFMKNSIGAEISTKQLKWKVRDFKEKFERGKWKYDDKTDIGLLKKIDWANNGGNEVGKGNEKVIAEKWTKNDADISLHVNESDDDISLLVNEMSSSLSYT 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01538 120 Pfam Protein of unknown function, DUF573 1 63 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01538 Trre-Chr10 13224722 13225084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01538 1 47 GeBP Transcription Factor Family AT1G61730 38.298 9.12e-06 41.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre10g01538 DUF573 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01538 - K25631 tpra:123884067 84.3445