Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01526 ATGCTGAAAAATATAGGTTGGCTAGATGTTGCTGAGAATCATTTGTCCGGGGACATTCCTGGAACCATTGGTGAATGCATAAGCTTAGAATCCCTTCAATTGCAAGGGAACTCCTTCAACGGAACAATACCGTCCTCTTTTGCTTCTCTCAAAGGTGAGGTACCAACAAATGGTGTCTTTGAAAATGCAACACAAGTAGCACTGATTGGAAACAATAAGCTTTGTGGTGGCTCGGGAAGTTTTGGTTCTGTGTACAGAGGACATCTTGTGTCAGAAGATAATTTTGTTGCTGTAAAGGTGTTGAACCTCCAAAAAAAGGGAGCTCACAAGAGCTTCTTTGTTGAATATTACAAAGGCCAGGAATTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTTTAAATGCAGAGCCTCCAACAACATTGGACCTCAGTCATAGATTAAATATCATTATCGATGTTGCTTCTGCATTACATTATCTTCATCGAGAATGCGAGCAACTGGTCATTCATTGTGATCTAAAGCCAAGCAATGTCCTCCTCGATAATGACATGGTTGCTCGTGTGAGTGATTTTGGCATAGCAAGACTTGTCTCGCTCATTAGCAACATCTCTCATAAAGATACTAGTACAATTGGAATAAAAGGGACTATTGGTTATGCTCCACCTGAGTATGGATTGGGTTCAGAAGTGTCCACATTTGGTGACATGTATAGCTTCGGAATCCTTATGTTGGAAATGCTTACCGGTAGAAGACCCACTGACGAAGTTTATGGAGATGGTCAAAATCTGCATAACTTTGTTGCAATTTCATTTCCTGATAATCTTATAAATATTTTGGACCCATATCTTTTGTCAAGAAATGGAGAAGTAGCAATGGAAGATCGAAATCGTGAGACTCGTATTCCAATTGTAGAGGAGTGCTTAGTTTCTCTTTTTAGGATTGGACTTATTTGTTCATTGGAATCACCCAGGGAAAGAATGAATATTGTGGATGTTACTAGAGAGCTTAACATTATCAAAAAAGCTTTCTTCTCCGCATATGATTTCTATGTGAATGTGTTCAGTATAGATTTTTCTGCAACTAAGTTGTTGCTATAA 1131 0.3837 MLKNIGWLDVAENHLSGDIPGTIGECISLESLQLQGNSFNGTIPSSFASLKGEVPTNGVFENATQVALIGNNKLCGGSGSFGSVYRGHLVSEDNFVAVKVLNLQKKGAHKSFFVEYYKGQEFKALVFDYMKNGSLEQWLHPEILNAEPPTTLDLSHRLNIIIDVASALHYLHRECEQLVIHCDLKPSNVLLDNDMVARVSDFGIARLVSLISNISHKDTSTIGIKGTIGYAPPEYGLGSEVSTFGDMYSFGILMLEMLTGRRPTDEVYGDGQNLHNFVAISFPDNLINILDPYLLSRNGEVAMEDRNRETRIPIVEECLVSLFRIGLICSLESPRERMNIVDVTRELNIIKKAFFSAYDFYVNVFSIDFSATKLLL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01526 376 SUPERFAMILY Protein kinase-like (PK-like) 77 348 IPR011009 -
Trre10g01526 376 SUPERFAMILY L domain-like 2 72 - -
Trre10g01526 376 Gene3D Ribonuclease Inhibitor 1 63 IPR032675 -
Trre10g01526 376 SMART serkin_6 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01526 376 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 130 359 - -
Trre10g01526 376 Pfam Protein kinase domain 115 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01526 376 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01526 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Trre10g01526 376 Gene3D Phosphorylase Kinase; domain 1 64 125 - -
Trre10g01526 376 Gene3D Transferase(Phosphotransferase) domain 1 130 360 - -
Trre10g01526 376 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01526 Trre-Chr10 13094310 13096280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01526 2 81 Receptor kinase-like Gene Family AT3G47570 37.069 1.10e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre10g01526 Pkinase 2.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01526 - - mtr:25486456 449.899