Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01525 ATGCTTCACGGAAATATCCCTCCTAGCATAGGAAACTGCCAACAGTTACAATATCTAGATTTTTCGCAGAATAAGCTTGAAGGAACCATACCTATAGAGGTTTTTAATCTTTTTTCTTTATCAAATCTCTTGGACTTGTCATGTAACTCTTTGAGTGGTAGCTTACCAAGAGAAATGGGTCTGCTAAAAAATATAGAATTGCTAAATGTTTTTGAGAATCATTTGTGTGGGGAAATTCCTGAAACCATCGGTGAATGCATAAGGTTAGAATCCCTTCAATTGCAAGGAAACTCCTTAAATGGAACAATACCATACTCTTTAGGCTCTCTCAAAGTTCTTAGATATTTAGACCTTTCAAGAAATCAATTATCTGGATCAATTCCTGATGTTATGCAGAATATCTCAGGCTTAGAACACTTGAATGTATCTTGTAACATGTTGGATGGTGAGGTACCGAAAGATGGTGTCTTTGGAAATGCAACTCAAGTAGCAATTATTGGAAACAATAAACTTTGTGGAGGTACTTCACAAATGCATCTACCACCATGTCCCATCACACATGGGAAACACACAAAACACCTTAAATTCAAGTTGATAGTTGTGATAGTTAGTGTGGTTTCTTTTCTTCTCATACTTTCATTTATTATAACTATCTTCTGGATGAGGAAAAGAAATCAAAAGAAATCGTTTGAATCACCAACAATTGATCAACTAACTAAGGTTTCATACCAAGCCTTACATCTAGGAACTGATGGGTTCTCGACTAGAAACTTGATAGGCTCGGGAAGTTTTGGTTCTGTGCACAAAGGAAATCTTGTGTCGGAAGATAATGTTGTTGCTGTAAAGGTCTTGAACCTCCAAAAAAAGGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAACATTAGACACCGAAATTTAATAAAGATTTTAACATGTTGTTCGAGTACAGATTACAAAGGCCAAGAATTCAAAGCTTTAATTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTTTAAATGCAGATCCTCCAGCAACATTAGACCTCAGTCATAGATTAAACATCATTATTGATGTTGCTTCTGCTTTACATTATCTTCATCAAGAATGTGAGCAATTGGTCATTCATTGTGATATAAAGCCAAGTAATGTCCTTCTGGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCTAGACTCATCTCAGCCATTGGCGGTACCTCTAATAAGAATACAAGCACAATTGGAATAAAAGGAACTGTTGGTTATTCTCCTCCAGAGTATGGGCTGGGTTCTGAAGTGTCAACATGTGGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATGCTTACCGGTAAAAGACCCACTGATGAAGCTTTTGAAGATGATCAAAACCTGCATAACTTTGTTGGGGATTTATTTCCTGATAATCTTATAAAGATTTTGGATCCAAATCTTGTATCAAGAGATGTAGAAAACAATGAGATTTTTATTCCAAGTGCAGAGGAGTGCTTAATTTCACTTTTTAAGATTGGACTTGTTTGTTCAATGGAATCACCGAAAAAAAGAATGAATATTGTGGATGTCACTAGAGAGCTTATCATAATCAAAAAGGCTTTCCTCACCGGTGAGATAAACTGA 1680 0.3607 MLHGNIPPSIGNCQQLQYLDFSQNKLEGTIPIEVFNLFSLSNLLDLSCNSLSGSLPREMGLLKNIELLNVFENHLCGEIPETIGECIRLESLQLQGNSLNGTIPYSLGSLKVLRYLDLSRNQLSGSIPDVMQNISGLEHLNVSCNMLDGEVPKDGVFGNATQVAIIGNNKLCGGTSQMHLPPCPITHGKHTKHLKFKLIVVIVSVVSFLLILSFIITIFWMRKRNQKKSFESPTIDQLTKVSYQALHLGTDGFSTRNLIGSGSFGSVHKGNLVSEDNVVAVKVLNLQKKGAHKSFIAECNALKNIRHRNLIKILTCCSSTDYKGQEFKALIFDYMKNGSLEQWLHPEILNADPPATLDLSHRLNIIIDVASALHYLHQECEQLVIHCDIKPSNVLLDDDMVAHVSDFGIARLISAIGGTSNKNTSTIGIKGTVGYSPPEYGLGSEVSTCGDMYSFGILMLEMLTGKRPTDEAFEDDQNLHNFVGDLFPDNLIKILDPNLVSRDVENNEIFIPSAEECLISLFKIGLVCSMESPKKRMNIVDVTRELIIIKKAFLTGEIN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01525 559 PANTHER OS04G0122200 PROTEIN 1 544 - -
Trre10g01525 559 Gene3D Transferase(Phosphotransferase) domain 1 335 554 - -
Trre10g01525 559 SUPERFAMILY Protein kinase-like (PK-like) 227 548 IPR011009 -
Trre10g01525 559 FunFam Leucine-rich repeat receptor protein kinase EMS1 81 178 - -
Trre10g01525 559 SMART serkin_6 253 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01525 559 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Trre10g01525 559 ProSiteProfiles Protein kinase domain profile. 253 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01525 559 ProSitePatterns Protein kinases ATP-binding region signature. 259 282 IPR017441 GO:0005524
Trre10g01525 559 Gene3D Ribonuclease Inhibitor 1 192 IPR032675 -
Trre10g01525 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Trre10g01525 559 SUPERFAMILY L domain-like 2 173 - -
Trre10g01525 559 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 80 - -
Trre10g01525 559 Gene3D Phosphorylase Kinase; domain 1 215 334 - -
Trre10g01525 559 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 335 558 - -
Trre10g01525 559 Pfam Protein kinase domain 255 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01525 559 FunFam LRR receptor-like serine/threonine-protein kinase EFR 223 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01525 Trre-Chr10 13040736 13042534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01525 2 554 Receptor kinase-like Gene Family AT3G47570 47.695 3.04e-170 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre10g01525 Pkinase 4.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01525 - - mtr:25486456 835.869