Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01518 ATGAAAAATGGGAGTCTAGAACTATGGCTGCATCCTGAAATTTTAAATGAAGAGCATCCAATGACATTGAGCCTTGGTCAAAGATTAAACATAATTATCGATGTTGCTGATGCATTACATTATCTTCATCAAGAATGTGAGCAATTAATCCTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGAATAGCAAGACTTATCTTAGCCATTGGTGCCAGCTCTCGGAAGGATACTAGTAGTAGTACAATTGGAGTTAAAGGGACTATTGGTTATGCTCCTCTAGAGTACGGAATGGGTTCTGAAGTTTCCACATGTGGTGACATGTATAGCTTTGGAATTCTGGTGTTGGAAATGCTTACCGGTAAAAGACCTACTGATGAAGTTTTTAAAAATGGTCAAAATCTGCATAACTTTGTTGCAATCTCATTTCCTGATAACATTACGAAGATTTTAGACCCACACCTTGTATCAAAAGATGTAGAAGTAGCAATACAAGATGAAAATCGTGATCAAAATCACATTCCAACTGTTGAAGAGTCCTTAGTTTCACTTTTTAGGATTGGTATTTTTTGTTCAATGGAATCACCAAAAGAAAGAATGAATATTGCAGATGTCACTGGAGAGCTTAGCAAAATCAAAAAAGCTTTTCTCACCGGTGAGATAAACTGA 705 0.366 MKNGSLELWLHPEILNEEHPMTLSLGQRLNIIIDVADALHYLHQECEQLILHCDLKPSNVLLDDDMVAHVSDFGIARLILAIGASSRKDTSSSTIGVKGTIGYAPLEYGMGSEVSTCGDMYSFGILVLEMLTGKRPTDEVFKNGQNLHNFVAISFPDNITKILDPHLVSKDVEVAIQDENRDQNHIPTVEESLVSLFRIGIFCSMESPKERMNIADVTGELSKIKKAFLTGEIN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01518 234 Gene3D Transferase(Phosphotransferase) domain 1 1 230 - -
Trre10g01518 234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 50 62 IPR008271 GO:0004672|GO:0006468
Trre10g01518 234 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 226 - -
Trre10g01518 234 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 233 - -
Trre10g01518 234 Pfam Protein kinase domain 20 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01518 234 SUPERFAMILY Protein kinase-like (PK-like) 1 219 IPR011009 -
Trre10g01518 234 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01518 234 SMART serkin_6 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01518 Trre-Chr10 12965106 12965924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01518 1 229 Receptor kinase-like Gene Family AT3G47580 45.455 7.01e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre10g01518 Pkinase 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01518 - - mtr:11405832 361.303